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From: <al...@us...> - 2009-03-11 02:59:01
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Revision: 1612
http://obi.svn.sourceforge.net/obi/?rev=1612&view=rev
Author: alanr
Date: 2009-03-11 02:58:46 +0000 (Wed, 11 Mar 2009)
Log Message:
-----------
initial work
Modified Paths:
--------------
trunk/src/tools/build/extract-core.lisp
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From: <mco...@us...> - 2009-03-10 22:42:57
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Revision: 1611
http://obi.svn.sourceforge.net/obi/?rev=1611&view=rev
Author: mcourtot
Date: 2009-03-10 22:42:56 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
removed superfluous footnote
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <mco...@us...> - 2009-03-10 22:13:28
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Revision: 1610
http://obi.svn.sourceforge.net/obi/?rev=1610&view=rev
Author: mcourtot
Date: 2009-03-10 22:13:17 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
almost there. maybe.
Added Paths:
-----------
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/CoreTermsWriter.java
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From: <al...@us...> - 2009-03-10 21:35:43
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Revision: 1609
http://obi.svn.sourceforge.net/obi/?rev=1609&view=rev
Author: alanr
Date: 2009-03-10 21:35:34 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
add alias for definition-editor
Modified Paths:
--------------
trunk/src/tools/build/util.lisp
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From: <al...@us...> - 2009-03-10 21:35:07
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Revision: 1608
http://obi.svn.sourceforge.net/obi/?rev=1608&view=rev
Author: alanr
Date: 2009-03-10 21:34:57 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
forgot to check in recent changes
Modified Paths:
--------------
trunk/src/tools/build/generate-obo.lisp
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From: <al...@us...> - 2009-03-10 21:34:10
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Revision: 1607
http://obi.svn.sourceforge.net/obi/?rev=1607&view=rev
Author: alanr
Date: 2009-03-10 21:34:06 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
initial work
Added Paths:
-----------
trunk/src/tools/build/extract-core.lisp
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From: <al...@us...> - 2009-03-10 21:33:20
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Revision: 1606
http://obi.svn.sourceforge.net/obi/?rev=1606&view=rev
Author: alanr
Date: 2009-03-10 21:33:18 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
decourtot
Modified Paths:
--------------
releases/2009-03-10/branches/obil.owl
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From: <mco...@us...> - 2009-03-10 20:04:54
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Revision: 1605
http://obi.svn.sourceforge.net/obi/?rev=1605&view=rev
Author: mcourtot
Date: 2009-03-10 20:04:39 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
added report on newids
Added Paths:
-----------
releases/2009-03-10/uri-report.txt
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From: <mco...@us...> - 2009-03-10 20:03:26
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Revision: 1604
http://obi.svn.sourceforge.net/obi/?rev=1604&view=rev
Author: mcourtot
Date: 2009-03-10 20:03:06 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
newids files for core terms
Modified Paths:
--------------
releases/2009-03-10/branches/obidi.owl
releases/2009-03-10/branches/obil.owl
Added Paths:
-----------
releases/2009-03-10/branches/
releases/2009-03-10/branches/AnnotationProperty.owl
releases/2009-03-10/branches/Biomaterial.owl
releases/2009-03-10/branches/DataFormatSpecification.owl
releases/2009-03-10/branches/DataTransformation.owl
releases/2009-03-10/branches/DigitalEntityPlus.owl
releases/2009-03-10/branches/InstrumentAndPart.owl
releases/2009-03-10/branches/OBI-Function.owl
releases/2009-03-10/branches/Obsolete.owl
releases/2009-03-10/branches/PlanAndPlannedProcess.owl
releases/2009-03-10/branches/Quality.owl
releases/2009-03-10/branches/Relations.owl
releases/2009-03-10/branches/Role.owl
releases/2009-03-10/branches/external-byhand.owl
releases/2009-03-10/branches/external.owl
releases/2009-03-10/branches/externalDerived.owl
Removed Paths:
-------------
releases/2009-03-10/branches/AnnotationProperty.owl
releases/2009-03-10/branches/Biomaterial.owl
releases/2009-03-10/branches/DataFormatSpecification.owl
releases/2009-03-10/branches/DataTransformation.owl
releases/2009-03-10/branches/DigitalEntityPlus.owl
releases/2009-03-10/branches/InstrumentAndPart.owl
releases/2009-03-10/branches/OBI-Function.owl
releases/2009-03-10/branches/Obsolete.owl
releases/2009-03-10/branches/PlanAndPlannedProcess.owl
releases/2009-03-10/branches/Quality.owl
releases/2009-03-10/branches/Relations.owl
releases/2009-03-10/branches/Role.owl
releases/2009-03-10/branches/external-byhand.owl
releases/2009-03-10/branches/external.owl
releases/2009-03-10/branches/externalDerived.owl
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From: <mco...@us...> - 2009-03-10 20:00:14
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Revision: 1603
http://obi.svn.sourceforge.net/obi/?rev=1603&view=rev
Author: mcourtot
Date: 2009-03-10 19:59:55 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
newids
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/DataTransformation.owl
trunk/src/ontology/branches/DigitalEntityPlus.owl
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/OBI-Function.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Quality.owl
trunk/src/ontology/branches/Role.owl
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From: <mco...@us...> - 2009-03-10 19:57:38
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Revision: 1602
http://obi.svn.sourceforge.net/obi/?rev=1602&view=rev
Author: mcourtot
Date: 2009-03-10 19:57:07 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
created directory for newids files in order to script core terms exctraction on stable ids
Added Paths:
-----------
releases/2009-03-10/
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From: <jam...@us...> - 2009-03-10 18:14:44
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Revision: 1601
http://obi.svn.sourceforge.net/obi/?rev=1601&view=rev
Author: jamesmalone
Date: 2009-03-10 18:14:27 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
Connecting some dt instances to gene pattern software instances
"but somehow the vital connection..."
Modified Paths:
--------------
trunk/src/ontology/instances/dataTransformationInstances.owl
trunk/src/ontology/instances/softwareInstances.owl
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From: <jam...@us...> - 2009-03-10 17:50:47
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Revision: 1600
http://obi.svn.sourceforge.net/obi/?rev=1600&view=rev
Author: jamesmalone
Date: 2009-03-10 17:50:31 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
Rollback to 1195 previous revision. This edit causes problems with slightly older versions of Protege. The obi.pprj.annotations files is the one to be used by newer versions of Protege - suggest move edit to there?
Modified Paths:
--------------
trunk/src/ontology/branches/obi.pprj.template
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From: <jam...@us...> - 2009-03-10 16:24:51
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Revision: 1599
http://obi.svn.sourceforge.net/obi/?rev=1599&view=rev
Author: jamesmalone
Date: 2009-03-10 16:24:46 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
first commit of DT instances file
Added Paths:
-----------
trunk/src/ontology/instances/dataTransformationInstances.owl
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From: <jam...@us...> - 2009-03-10 12:40:46
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Revision: 1598
http://obi.svn.sourceforge.net/obi/?rev=1598&view=rev
Author: jamesmalone
Date: 2009-03-10 12:40:33 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
added inf processing and data transformation as core terms
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <mco...@us...> - 2009-03-10 01:00:40
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Revision: 1597
http://obi.svn.sourceforge.net/obi/?rev=1597&view=rev
Author: mcourtot
Date: 2009-03-10 01:00:23 +0000 (Tue, 10 Mar 2009)
Log Message:
-----------
removed extra footnote package: template already specifies its own formatting, thus error
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <rbr...@us...> - 2009-03-09 23:26:16
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Revision: 1596
http://obi.svn.sourceforge.net/obi/?rev=1596&view=rev
Author: rbrinkman
Date: 2009-03-09 23:25:57 +0000 (Mon, 09 Mar 2009)
Log Message:
-----------
looks great!
Modified Paths:
--------------
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <mco...@us...> - 2009-03-09 22:13:01
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Revision: 1595
http://obi.svn.sourceforge.net/obi/?rev=1595&view=rev
Author: mcourtot
Date: 2009-03-09 22:12:47 +0000 (Mon, 09 Mar 2009)
Log Message:
-----------
added OWLED tex file for prepublication review
this file has already been reviewed by Daniel Schober, James Malone, Frank Gibson and Allyson Lister, and changes have been merged in between by Melanie
late SVN commit following subtle hint ;)
Added Paths:
-----------
trunk/docs/papers/owled2008/prepublication/
trunk/docs/papers/owled2008/prepublication/cell.png
trunk/docs/papers/owled2008/prepublication/comments.png
trunk/docs/papers/owled2008/prepublication/elsart-num-sort.bst
trunk/docs/papers/owled2008/prepublication/elsart.cls
trunk/docs/papers/owled2008/prepublication/elsart3p.cls
trunk/docs/papers/owled2008/prepublication/instances.png
trunk/docs/papers/owled2008/prepublication/owled.bib
trunk/docs/papers/owled2008/prepublication/owled.pdf
trunk/docs/papers/owled2008/prepublication/owled.tex
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From: <bjo...@us...> - 2009-03-09 17:42:13
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Revision: 1594
http://obi.svn.sourceforge.net/obi/?rev=1594&view=rev
Author: bjoernpeters
Date: 2009-03-09 17:41:56 +0000 (Mon, 09 Mar 2009)
Log Message:
-----------
Added alphabetical 'owl serialization' to obi.pprj.template file, as recommended by Alan.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.pprj.template
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From: <jam...@us...> - 2009-03-09 16:57:31
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Revision: 1593
http://obi.svn.sourceforge.net/obi/?rev=1593&view=rev
Author: jamesmalone
Date: 2009-03-09 16:57:23 +0000 (Mon, 09 Mar 2009)
Log Message:
-----------
addition of some genepattern software instances for my use case
haven't linked them to DTs yet
Modified Paths:
--------------
trunk/src/ontology/instances/softwareInstances.owl
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From: <jen...@us...> - 2009-03-09 15:01:58
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Revision: 1592
http://obi.svn.sourceforge.net/obi/?rev=1592&view=rev
Author: jenfostel
Date: 2009-03-09 15:01:43 +0000 (Mon, 09 Mar 2009)
Log Message:
-----------
changed specimen to agree with biomaterial; minor edits to other terms in role branch
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <al...@us...> - 2009-03-09 14:39:39
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Revision: 1591
http://obi.svn.sourceforge.net/obi/?rev=1591&view=rev
Author: alanr
Date: 2009-03-09 14:39:38 +0000 (Mon, 09 Mar 2009)
Log Message:
-----------
update releases directory logical pathname
Modified Paths:
--------------
trunk/src/tools/build/obi.asd
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From: <al...@us...> - 2009-03-09 14:39:20
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Revision: 1590
http://obi.svn.sourceforge.net/obi/?rev=1590&view=rev
Author: alanr
Date: 2009-03-09 14:39:07 +0000 (Mon, 09 Mar 2009)
Log Message:
-----------
path-of-last-released-obi also return release root
Modified Paths:
--------------
trunk/src/tools/build/qc-queries.lisp
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From: <p_r...@us...> - 2009-03-07 20:51:39
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Revision: 1589
http://obi.svn.sourceforge.net/obi/?rev=1589&view=rev
Author: p_rocca_serra
Date: 2009-03-07 20:51:32 +0000 (Sat, 07 Mar 2009)
Log Message:
-----------
final edits
Added Paths:
-----------
trunk/docs/papers/QuickTerms_ICBO2009/OBI-QuickTerm-Template-ICBO-final.doc
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From: <mco...@us...> - 2009-03-07 20:47:23
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Revision: 1588
http://obi.svn.sourceforge.net/obi/?rev=1588&view=rev
Author: mcourtot
Date: 2009-03-07 20:47:03 +0000 (Sat, 07 Mar 2009)
Log Message:
-----------
removed myself from list of authors
Modified Paths:
--------------
trunk/docs/papers/QuickTerms_ICBO2009/OBI-QuickTerm-Template-ICBO.doc
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