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From: <al...@us...> - 2009-10-24 15:39:32
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Revision: 2336
http://obi.svn.sourceforge.net/obi/?rev=2336&view=rev
Author: alanr
Date: 2009-10-24 15:39:24 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
newids
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-24 15:39:10
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Revision: 2335
http://obi.svn.sourceforge.net/obi/?rev=2335&view=rev
Author: alanr
Date: 2009-10-24 15:38:58 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
newids
Modified Paths:
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trunk/src/ontology/branches/IEDB-use-case.owl
trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-24 13:50:21
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Revision: 2334
http://obi.svn.sourceforge.net/obi/?rev=2334&view=rev
Author: mcourtot
Date: 2009-10-24 13:50:14 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
added variables specs
independent variable spec IAO_0000011 -> OBI_0000750
dependent variable spec IAO_0000014 -> OBI_0000751
controlled variable spec IAO_0000016 -> OBI_0000785
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-24 03:25:25
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Revision: 2333
http://obi.svn.sourceforge.net/obi/?rev=2333&view=rev
Author: mcourtot
Date: 2009-10-24 03:25:19 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
diagnosis take 2
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-24 03:18:36
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Revision: 2332
http://obi.svn.sourceforge.net/obi/?rev=2332&view=rev
Author: mcourtot
Date: 2009-10-24 03:18:29 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
diagnosis -> diagnosis textual entity, moved from study interpretation to textual entity hierarchy as per workshop AI
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-24 03:03:43
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Revision: 2331
http://obi.svn.sourceforge.net/obi/?rev=2331&view=rev
Author: mcourtot
Date: 2009-10-24 03:03:29 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
repaired obsolescence reason specification values set as string. those values have been copied to editor notes
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-24 02:50:45
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Revision: 2330
http://obi.svn.sourceforge.net/obi/?rev=2330&view=rev
Author: mcourtot
Date: 2009-10-24 02:50:39 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
gene list visualization has output table (IAO_0000306) instead of report table
fix berichrom spelling - https://sourceforge.net/tracker/?func=detail&aid=2882587&group_id=177891&atid=886178
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-24 02:29:33
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Revision: 2329
http://obi.svn.sourceforge.net/obi/?rev=2329&view=rev
Author: mcourtot
Date: 2009-10-24 02:29:26 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
removed in branch annotation
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-24 02:23:34
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Revision: 2328
http://obi.svn.sourceforge.net/obi/?rev=2328&view=rev
Author: mcourtot
Date: 2009-10-24 02:23:14 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
removed annotation for IAO_0000184 that crept into OBI
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <jam...@us...> - 2009-10-23 22:11:00
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Revision: 2327
http://obi.svn.sourceforge.net/obi/?rev=2327&view=rev
Author: jamesmalone
Date: 2009-10-23 22:10:50 +0000 (Fri, 23 Oct 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <al...@us...> - 2009-10-23 19:52:12
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Revision: 2326
http://obi.svn.sourceforge.net/obi/?rev=2326&view=rev
Author: alanr
Date: 2009-10-23 19:52:02 +0000 (Fri, 23 Oct 2009)
Log Message:
-----------
use the new feature in create external derived
Modified Paths:
--------------
trunk/src/tools/build/external-templates.txt
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From: <al...@us...> - 2009-10-23 19:51:47
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Revision: 2325
http://obi.svn.sourceforge.net/obi/?rev=2325&view=rev
Author: alanr
Date: 2009-10-23 19:51:41 +0000 (Fri, 23 Oct 2009)
Log Message:
-----------
minor bugfix
Modified Paths:
--------------
trunk/src/tools/build/create-external-derived.lisp
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From: <al...@us...> - 2009-10-23 13:31:33
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Revision: 2324
http://obi.svn.sourceforge.net/obi/?rev=2324&view=rev
Author: alanr
Date: 2009-10-23 13:31:14 +0000 (Fri, 23 Oct 2009)
Log Message:
-----------
add ability to specify default graph_base and then use _GRAPH_GOES_HERE_ in templates.
The graph name is constructed out of localname of the ontology and value of default graph_base.
Modified Paths:
--------------
trunk/src/tools/build/create-external-derived.lisp
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From: <yon...@us...> - 2009-10-23 11:54:55
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Revision: 2323
http://obi.svn.sourceforge.net/obi/?rev=2323&view=rev
Author: yongqunh
Date: 2009-10-23 11:54:47 +0000 (Fri, 23 Oct 2009)
Log Message:
-----------
Some updates--Oliver He
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS-terms.xls
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <par...@us...> - 2009-10-22 05:23:15
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Revision: 2322
http://obi.svn.sourceforge.net/obi/?rev=2322&view=rev
Author: parkinso
Date: 2009-10-22 05:23:07 +0000 (Thu, 22 Oct 2009)
Log Message:
-----------
workshop mandated cleanup of placeholders and other classes completed. HP
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <par...@us...> - 2009-10-22 04:18:44
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Revision: 2321
http://obi.svn.sourceforge.net/obi/?rev=2321&view=rev
Author: parkinso
Date: 2009-10-22 04:18:37 +0000 (Thu, 22 Oct 2009)
Log Message:
-----------
removed _under discussion and asserted non deprecated classes under role.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <par...@us...> - 2009-10-22 03:58:30
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Revision: 2320
http://obi.svn.sourceforge.net/obi/?rev=2320&view=rev
Author: parkinso
Date: 2009-10-22 03:58:21 +0000 (Thu, 22 Oct 2009)
Log Message:
-----------
deprecated _ prefi msi placeholder classes
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <jam...@us...> - 2009-10-21 22:36:09
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Revision: 2319
http://obi.svn.sourceforge.net/obi/?rev=2319&view=rev
Author: jamesmalone
Date: 2009-10-21 22:35:53 +0000 (Wed, 21 Oct 2009)
Log Message:
-----------
positional qualities now moved o conferred-quality.owl file
Modified Paths:
--------------
trunk/src/ontology/branches/conferred-quality.owl
trunk/src/ontology/branches/obi.owl
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From: <yon...@us...> - 2009-10-21 22:33:27
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Revision: 2318
http://obi.svn.sourceforge.net/obi/?rev=2318&view=rev
Author: yongqunh
Date: 2009-10-21 22:33:14 +0000 (Wed, 21 Oct 2009)
Log Message:
-----------
Updates by Oliver.
Modified Paths:
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trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.jpg
trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.vsd
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
trunk/docs/papers/JBMS_2009/OliverHe_Vaccine_protection_usecase.jpg
trunk/docs/papers/JBMS_2009/OliverHe_Vaccine_protection_usecase.vsd
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From: <jam...@us...> - 2009-10-21 22:33:14
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Revision: 2317
http://obi.svn.sourceforge.net/obi/?rev=2317&view=rev
Author: jamesmalone
Date: 2009-10-21 22:33:06 +0000 (Wed, 21 Oct 2009)
Log Message:
-----------
all conferred-qualitys moved, still to move positional qualities
Modified Paths:
--------------
trunk/src/ontology/branches/conferred-quality.owl
trunk/src/ontology/branches/obi.owl
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From: <ph...@us...> - 2009-10-21 22:32:04
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Revision: 2316
http://obi.svn.sourceforge.net/obi/?rev=2316&view=rev
Author: phillip
Date: 2009-10-21 22:31:52 +0000 (Wed, 21 Oct 2009)
Log Message:
-----------
Complete read through of the methods section
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master-resurrected.doc
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From: <jam...@us...> - 2009-10-21 22:25:36
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Revision: 2315
http://obi.svn.sourceforge.net/obi/?rev=2315&view=rev
Author: jamesmalone
Date: 2009-10-21 22:25:29 +0000 (Wed, 21 Oct 2009)
Log Message:
-----------
continuing move
Modified Paths:
--------------
trunk/src/ontology/branches/conferred-quality.owl
trunk/src/ontology/branches/obi-edit.repository.template
trunk/src/ontology/branches/obi.owl
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From: <jam...@us...> - 2009-10-21 22:13:10
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Revision: 2314
http://obi.svn.sourceforge.net/obi/?rev=2314&view=rev
Author: jamesmalone
Date: 2009-10-21 22:12:53 +0000 (Wed, 21 Oct 2009)
Log Message:
-----------
more moves of conferred-quality.owl
Modified Paths:
--------------
trunk/src/ontology/branches/conferred-quality.owl
trunk/src/ontology/branches/obi.owl
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From: <dir...@us...> - 2009-10-21 22:07:59
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Revision: 2313
http://obi.svn.sourceforge.net/obi/?rev=2313&view=rev
Author: dirkderom
Date: 2009-10-21 22:07:52 +0000 (Wed, 21 Oct 2009)
Log Message:
-----------
New version of use case, removed 'is_device'
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/Dirk_use case v2.vdx
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From: <jam...@us...> - 2009-10-21 22:07:04
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Revision: 2312
http://obi.svn.sourceforge.net/obi/?rev=2312&view=rev
Author: jamesmalone
Date: 2009-10-21 22:06:51 +0000 (Wed, 21 Oct 2009)
Log Message:
-----------
repos update adding conferred-quality.owl
Modified Paths:
--------------
trunk/src/ontology/branches/obi-edit.repository.template
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