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From: <mco...@us...> - 2009-10-28 19:51:35
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Revision: 2361
http://obi.svn.sourceforge.net/obi/?rev=2361&view=rev
Author: mcourtot
Date: 2009-10-28 19:51:24 +0000 (Wed, 28 Oct 2009)
Log Message:
-----------
reviewed and accepted changes throughout the paper (changes = edits, deletion, insertions, formatting etc)
need now to address comments
editing still ongoing
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <bjo...@us...> - 2009-10-28 15:01:48
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Revision: 2360
http://obi.svn.sourceforge.net/obi/?rev=2360&view=rev
Author: bjoernpeters
Date: 2009-10-28 15:01:42 +0000 (Wed, 28 Oct 2009)
Log Message:
-----------
updated PBS buffer / concentration to avoid the tricky bits.
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master-resurrected.doc
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From: <dir...@us...> - 2009-10-28 03:27:24
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Revision: 2359
http://obi.svn.sourceforge.net/obi/?rev=2359&view=rev
Author: dirkderom
Date: 2009-10-28 03:27:09 +0000 (Wed, 28 Oct 2009)
Log Message:
-----------
Updated figure, moved discussion of neuroscience use case, edited/updated the use case description to new version of figure
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <bjo...@us...> - 2009-10-27 16:11:17
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Revision: 2358
http://obi.svn.sourceforge.net/obi/?rev=2358&view=rev
Author: bjoernpeters
Date: 2009-10-27 16:11:06 +0000 (Tue, 27 Oct 2009)
Log Message:
-----------
Bibliography update
Modified Paths:
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trunk/docs/papers/release/release.Data/rdb/csort.MYD
trunk/docs/papers/release/release.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/rdb/misc.MYI
trunk/docs/papers/release/release.enl
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From: <bjo...@us...> - 2009-10-27 04:55:17
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Revision: 2357
http://obi.svn.sourceforge.net/obi/?rev=2357&view=rev
Author: bjoernpeters
Date: 2009-10-27 04:55:11 +0000 (Tue, 27 Oct 2009)
Log Message:
-----------
Updated metadata of IEDB classes missing definitions.
Modified Paths:
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trunk/src/ontology/branches/obi-edit.owl
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-27 04:13:03
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Revision: 2356
http://obi.svn.sourceforge.net/obi/?rev=2356&view=rev
Author: bjoernpeters
Date: 2009-10-27 04:12:51 +0000 (Tue, 27 Oct 2009)
Log Message:
-----------
added bfo to source of material entity
Modified Paths:
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trunk/docs/papers/release/Figures/Figure 1.pptx
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From: <bjo...@us...> - 2009-10-27 04:11:18
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Revision: 2355
http://obi.svn.sourceforge.net/obi/?rev=2355&view=rev
Author: bjoernpeters
Date: 2009-10-27 04:11:12 +0000 (Tue, 27 Oct 2009)
Log Message:
-----------
Removed comments that were addressed; added references; updated Figure 1 to cite BFO as source of material entity.
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master-resurrected.doc
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/csort.MYD
trunk/docs/papers/release/release.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/rdb/jterms.MYD
trunk/docs/papers/release/release.Data/rdb/jterms.MYI
trunk/docs/papers/release/release.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/rdb/refs.MYD
trunk/docs/papers/release/release.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYD
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/terms.MYD
trunk/docs/papers/release/release.Data/rdb/terms.MYI
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From: <yon...@us...> - 2009-10-26 22:44:46
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Revision: 2354
http://obi.svn.sourceforge.net/obi/?rev=2354&view=rev
Author: yongqunh
Date: 2009-10-26 22:44:40 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
More updates.
--Oliver
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <yon...@us...> - 2009-10-26 22:40:58
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Revision: 2353
http://obi.svn.sourceforge.net/obi/?rev=2353&view=rev
Author: yongqunh
Date: 2009-10-26 22:40:52 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
More updates. -- Oliver
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <sa-...@us...> - 2009-10-26 22:31:45
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Revision: 2352
http://obi.svn.sourceforge.net/obi/?rev=2352&view=rev
Author: sa-sansone
Date: 2009-10-26 22:31:33 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <sa-...@us...> - 2009-10-26 22:07:27
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Revision: 2351
http://obi.svn.sourceforge.net/obi/?rev=2351&view=rev
Author: sa-sansone
Date: 2009-10-26 22:02:19 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
I reckon we need to include the whole consortium members in this paper. This is not a technical piece, like MIREOT or Quick Terms. This piece describes the core function of OBI: we would not be able to write this piece (so show how to model) if OBI was not there in the first place.
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <jam...@us...> - 2009-10-26 19:03:26
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Revision: 2350
http://obi.svn.sourceforge.net/obi/?rev=2350&view=rev
Author: jamesmalone
Date: 2009-10-26 19:03:09 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
added ISA-Tab to introduction.
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master-resurrected.doc
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From: <par...@us...> - 2009-10-26 10:24:09
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Revision: 2349
http://obi.svn.sourceforge.net/obi/?rev=2349&view=rev
Author: parkinso
Date: 2009-10-26 10:24:03 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
Jess's version plus HP edits across whole file
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <par...@us...> - 2009-10-25 22:37:04
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Revision: 2348
http://obi.svn.sourceforge.net/obi/?rev=2348&view=rev
Author: parkinso
Date: 2009-10-25 22:36:50 +0000 (Sun, 25 Oct 2009)
Log Message:
-----------
Jessica's edits as new file
Added Paths:
-----------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI-JT.doc
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From: <bjo...@us...> - 2009-10-25 21:39:30
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Revision: 2347
http://obi.svn.sourceforge.net/obi/?rev=2347&view=rev
Author: bjoernpeters
Date: 2009-10-25 21:39:24 +0000 (Sun, 25 Oct 2009)
Log Message:
-----------
Added example of a view of OBI which includes the ONTIE terms
Added Paths:
-----------
trunk/src/examples/views/
trunk/src/examples/views/ontie.owl
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From: <bjo...@us...> - 2009-10-25 20:38:12
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Revision: 2346
http://obi.svn.sourceforge.net/obi/?rev=2346&view=rev
Author: bjoernpeters
Date: 2009-10-25 20:38:06 +0000 (Sun, 25 Oct 2009)
Log Message:
-----------
Added 'direct submission to IEDB' as a report.
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-25 02:43:06
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Revision: 2345
http://obi.svn.sourceforge.net/obi/?rev=2345&view=rev
Author: alanr
Date: 2009-10-25 02:42:58 +0000 (Sun, 25 Oct 2009)
Log Message:
-----------
TMPIAO_0000004
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-24 21:28:00
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Revision: 2342
http://obi.svn.sourceforge.net/obi/?rev=2342&view=rev
Author: mcourtot
Date: 2009-10-24 19:45:52 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
obsoleted normalized which is now redundant with normalized data set OBI_0000451
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-24 21:27:53
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Revision: 2343
http://obi.svn.sourceforge.net/obi/?rev=2343&view=rev
Author: mcourtot
Date: 2009-10-24 19:52:54 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
removed duplicate declaration of class conclusion textual entity
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-24 19:56:00
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Revision: 2344
http://obi.svn.sourceforge.net/obi/?rev=2344&view=rev
Author: mcourtot
Date: 2009-10-24 19:55:50 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
corrected spelling of lighet emission function
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-24 19:43:07
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Revision: 2341
http://obi.svn.sourceforge.net/obi/?rev=2341&view=rev
Author: alanr
Date: 2009-10-24 18:32:42 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
more fix
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.owl
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-24 18:21:54
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Revision: 2340
http://obi.svn.sourceforge.net/obi/?rev=2340&view=rev
Author: alanr
Date: 2009-10-24 18:21:46 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
various fixups for release
Modified Paths:
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trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
trunk/src/ontology/branches/obi.owl
Added Paths:
-----------
trunk/src/ontology/branches/text-mining-experiment.owl
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From: <al...@us...> - 2009-10-24 18:16:59
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Revision: 2339
http://obi.svn.sourceforge.net/obi/?rev=2339&view=rev
Author: alanr
Date: 2009-10-24 18:16:53 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
add annotation property decls
Modified Paths:
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trunk/src/ontology/branches/conferred-quality.owl
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From: <al...@us...> - 2009-10-24 16:16:58
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Revision: 2338
http://obi.svn.sourceforge.net/obi/?rev=2338&view=rev
Author: alanr
Date: 2009-10-24 16:16:52 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
is-member-of
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-24 15:41:48
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Revision: 2337
http://obi.svn.sourceforge.net/obi/?rev=2337&view=rev
Author: alanr
Date: 2009-10-24 15:41:41 +0000 (Sat, 24 Oct 2009)
Log Message:
-----------
new code for assigning new ids
Added Paths:
-----------
trunk/src/tools/build/new-newids.lisp
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