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From: <al...@us...> - 2009-11-02 22:12:28
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Revision: 2411
http://obi.svn.sourceforge.net/obi/?rev=2411&view=rev
Author: alanr
Date: 2009-11-02 22:12:19 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
create version of obi for bioportal
Added Paths:
-----------
trunk/src/tools/build/bioportal-obi.lisp
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From: <al...@us...> - 2009-11-02 22:12:07
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Revision: 2410
http://obi.svn.sourceforge.net/obi/?rev=2410&view=rev
Author: alanr
Date: 2009-11-02 22:11:53 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
jena utilities
Added Paths:
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trunk/src/tools/build/jena.lisp
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From: <al...@us...> - 2009-11-02 22:07:54
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Revision: 2409
http://obi.svn.sourceforge.net/obi/?rev=2409&view=rev
Author: alanr
Date: 2009-11-02 22:07:48 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
look ma, no obsolete classes
Modified Paths:
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trunk/src/ontology/branches/bioportal-obi.owl
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From: <rbr...@us...> - 2009-11-02 21:39:36
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Revision: 2408
http://obi.svn.sourceforge.net/obi/?rev=2408&view=rev
Author: rbrinkman
Date: 2009-11-02 21:39:30 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
typos mostly, a few unresolved comments and things to verify
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <al...@us...> - 2009-11-02 21:27:22
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Revision: 2407
http://obi.svn.sourceforge.net/obi/?rev=2407&view=rev
Author: alanr
Date: 2009-11-02 21:27:12 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
remove isDefinedBy assertions from dc:
Modified Paths:
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trunk/src/ontology/branches/bioportal-obi.owl
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From: <al...@us...> - 2009-11-02 21:19:56
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Revision: 2406
http://obi.svn.sourceforge.net/obi/?rev=2406&view=rev
Author: alanr
Date: 2009-11-02 21:19:49 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
clean out assertions about imported ontologies
Modified Paths:
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trunk/src/ontology/branches/bioportal-obi.owl
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From: <mco...@us...> - 2009-11-02 20:17:36
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Revision: 2405
http://obi.svn.sourceforge.net/obi/?rev=2405&view=rev
Author: mcourtot
Date: 2009-11-02 20:17:30 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
added pprj file for easy browsing
removed rdf:description of online resources which cause protege to fetch them
updated duplicate labels of pato 1237 and 1238 and fma 9669 and 9670
I would feel happier if we could remove the duplicate adjuvant/adjuvent role
do we keep obsolete in this version?
Modified Paths:
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trunk/src/ontology/branches/bioportal-obi.owl
Added Paths:
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trunk/src/ontology/branches/bioportal-obi.pprj
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From: <al...@us...> - 2009-11-02 19:56:01
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Revision: 2404
http://obi.svn.sourceforge.net/obi/?rev=2404&view=rev
Author: alanr
Date: 2009-11-02 19:55:53 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
code for bioportal release
Modified Paths:
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trunk/src/tools/build/edit-property.lisp
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From: <al...@us...> - 2009-11-02 19:54:23
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Revision: 2403
http://obi.svn.sourceforge.net/obi/?rev=2403&view=rev
Author: alanr
Date: 2009-11-02 19:54:16 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
testing
Added Paths:
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trunk/src/ontology/branches/bioportal-obi.owl
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From: <jzh...@us...> - 2009-11-02 19:10:40
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Revision: 2402
http://obi.svn.sourceforge.net/obi/?rev=2402&view=rev
Author: jzheng24
Date: 2009-11-02 19:10:32 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
Update terms table included all terms used in the paper (compatible with OBI rc1.0)
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS-terms.xls
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <al...@us...> - 2009-11-02 18:25:37
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Revision: 2401
http://obi.svn.sourceforge.net/obi/?rev=2401&view=rev
Author: alanr
Date: 2009-11-02 18:25:28 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
moved process-> processual entity
Modified Paths:
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trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-11-02 18:20:18
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Revision: 2400
http://obi.svn.sourceforge.net/obi/?rev=2400&view=rev
Author: bjoernpeters
Date: 2009-11-02 18:20:10 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
checked in Jie's review
Added Paths:
-----------
trunk/docs/papers/release/Jie comments.doc
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From: <lso...@us...> - 2009-11-02 17:55:38
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Revision: 2399
http://obi.svn.sourceforge.net/obi/?rev=2399&view=rev
Author: lsoldatova
Date: 2009-11-02 17:55:31 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
updates on use case 3
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <jzh...@us...> - 2009-11-02 06:15:01
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Revision: 2398
http://obi.svn.sourceforge.net/obi/?rev=2398&view=rev
Author: jzheng24
Date: 2009-11-02 06:14:54 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
update terms table according to locked obi for release rc 1.0, add alternative terms column
Modified Paths:
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trunk/docs/papers/release/Supplemental Table 1.xls
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From: <al...@us...> - 2009-11-02 03:18:00
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Revision: 2397
http://obi.svn.sourceforge.net/obi/?rev=2397&view=rev
Author: alanr
Date: 2009-11-02 03:17:53 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
https://sourceforge.net/tracker/?func=detail&aid=2890524&group_id=177891&atid=886178
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-11-02 02:47:37
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Revision: 2396
http://obi.svn.sourceforge.net/obi/?rev=2396&view=rev
Author: mcourtot
Date: 2009-11-02 02:47:30 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
added definition and editor note for protein-protein interaction detection assay. Thanks to Bjoern.
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-11-02 02:39:03
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Revision: 2395
http://obi.svn.sourceforge.net/obi/?rev=2395&view=rev
Author: alanr
Date: 2009-11-02 02:38:54 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
utilities used when cleaning the editor notes
Added Paths:
-----------
trunk/src/tools/build/edit-property.lisp
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From: <al...@us...> - 2009-11-02 02:31:30
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Revision: 2394
http://obi.svn.sourceforge.net/obi/?rev=2394&view=rev
Author: alanr
Date: 2009-11-02 02:31:24 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
add curator note
Modified Paths:
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trunk/src/tools/build/util.lisp
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From: <bjo...@us...> - 2009-11-02 01:07:51
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Revision: 2393
http://obi.svn.sourceforge.net/obi/?rev=2393&view=rev
Author: bjoernpeters
Date: 2009-11-02 01:07:43 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
added notes from philly workshop
Added Paths:
-----------
trunk/src/examples/development/alternate_concentration_bp/Updated Philly Workshop notes for concentration.txt
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From: <mco...@us...> - 2009-11-02 00:31:56
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Revision: 2392
http://obi.svn.sourceforge.net/obi/?rev=2392&view=rev
Author: mcourtot
Date: 2009-11-02 00:31:47 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
removed all empty annotation properties. nmr/chrom terms each add an <obo:IAO_0000118 xml:lang="en"></obo:IAO_0000118> (alternative term) empty property...
https://sourceforge.net/tracker/?func=detail&aid=2887874&group_id=177891&atid=886178
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-11-02 00:03:00
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Revision: 2391
http://obi.svn.sourceforge.net/obi/?rev=2391&view=rev
Author: mcourtot
Date: 2009-11-02 00:02:52 +0000 (Mon, 02 Nov 2009)
Log Message:
-----------
removed source pending annotation property values - cf https://sourceforge.net/tracker/?func=detail&aid=2887928&group_id=177891&atid=886178
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-11-01 23:54:17
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Revision: 2390
http://obi.svn.sourceforge.net/obi/?rev=2390&view=rev
Author: mcourtot
Date: 2009-11-01 23:54:08 +0000 (Sun, 01 Nov 2009)
Log Message:
-----------
example of usage to be added annotation property removed - cf https://sourceforge.net/tracker/?func=detail&aid=2887965&group_id=177891&atid=886178
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-11-01 23:45:20
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Revision: 2389
http://obi.svn.sourceforge.net/obi/?rev=2389&view=rev
Author: mcourtot
Date: 2009-11-01 23:45:12 +0000 (Sun, 01 Nov 2009)
Log Message:
-----------
image stream -> Amnis ImageStream, cf https://sourceforge.net/tracker/?func=detail&aid=2888037&group_id=177891&atid=886178
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-11-01 13:32:31
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Revision: 2388
http://obi.svn.sourceforge.net/obi/?rev=2388&view=rev
Author: alanr
Date: 2009-11-01 13:32:22 +0000 (Sun, 01 Nov 2009)
Log Message:
-----------
comments in email
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <al...@us...> - 2009-11-01 05:20:26
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Revision: 2387
http://obi.svn.sourceforge.net/obi/?rev=2387&view=rev
Author: alanr
Date: 2009-11-01 05:20:20 +0000 (Sun, 01 Nov 2009)
Log Message:
-----------
glucose metabolic process -> biological process
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
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