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From: <al...@us...> - 2009-11-01 05:12:01
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Revision: 2386
http://obi.svn.sourceforge.net/obi/?rev=2386&view=rev
Author: alanr
Date: 2009-11-01 05:11:55 +0000 (Sun, 01 Nov 2009)
Log Message:
-----------
glucose metabolic process is a biological process
Modified Paths:
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trunk/src/ontology/branches/external.owl
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From: <bjo...@us...> - 2009-11-01 01:48:00
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Revision: 2385
http://obi.svn.sourceforge.net/obi/?rev=2385&view=rev
Author: bjoernpeters
Date: 2009-11-01 01:47:54 +0000 (Sun, 01 Nov 2009)
Log Message:
-----------
Added Paths:
-----------
trunk/docs/papers/release/Manuscript.doc
Removed Paths:
-------------
trunk/docs/papers/release/Release-Manuscript-Master-resurrected.doc
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From: <bjo...@us...> - 2009-11-01 01:46:36
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Revision: 2384
http://obi.svn.sourceforge.net/obi/?rev=2384&view=rev
Author: bjoernpeters
Date: 2009-11-01 01:46:28 +0000 (Sun, 01 Nov 2009)
Log Message:
-----------
Added Paths:
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trunk/docs/papers/release/Figure 1.pptx
trunk/docs/papers/release/Figure 2.ppt
trunk/docs/papers/release/Figure 4.gif
trunk/docs/papers/release/Figure 5.ppt
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From: <bjo...@us...> - 2009-11-01 01:42:33
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Revision: 2383
http://obi.svn.sourceforge.net/obi/?rev=2383&view=rev
Author: bjoernpeters
Date: 2009-11-01 01:42:23 +0000 (Sun, 01 Nov 2009)
Log Message:
-----------
removed files not used in the manuscript submission. addressed comments in the paper, and verified priority 9 tracker items (use of principal investigator role, test substance role, ...)
Modified Paths:
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trunk/docs/papers/release/Figures/Figure 5.ppt
trunk/docs/papers/release/Release-Manuscript-Master-resurrected.doc
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/jterms.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/jterms.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/terms.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/terms.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.enl
trunk/docs/papers/release/release.Data/rdb/csort.MYD
trunk/docs/papers/release/release.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/rdb/jterms.MYD
trunk/docs/papers/release/release.Data/rdb/jterms.MYI
trunk/docs/papers/release/release.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/rdb/refs.MYD
trunk/docs/papers/release/release.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYD
trunk/docs/papers/release/release.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/terms.MYD
trunk/docs/papers/release/release.Data/rdb/terms.MYI
trunk/docs/papers/release/release.enl
Added Paths:
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trunk/docs/papers/release/Figures/Figure 4.gif
trunk/docs/papers/release/Supplemental Table 1.xls
Removed Paths:
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trunk/docs/papers/release/Figures/GenePattern-Use-case-image.gif
trunk/docs/papers/release/Figures/MS_AMA3.ppt
trunk/docs/papers/release/Figures/OBIfig2.ppt
trunk/docs/papers/release/Figures/assayManuscript.png
trunk/docs/papers/release/Notes during workshop.docx
trunk/docs/papers/release/OBITerm-ids.xls
trunk/docs/papers/release/temp_Discussion_OBI.doc
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From: <mco...@us...> - 2009-11-01 00:09:51
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Revision: 2382
http://obi.svn.sourceforge.net/obi/?rev=2382&view=rev
Author: mcourtot
Date: 2009-11-01 00:09:37 +0000 (Sun, 01 Nov 2009)
Log Message:
-----------
flattened obsolete hierarchy
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-31 21:52:41
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Revision: 2381
http://obi.svn.sourceforge.net/obi/?rev=2381&view=rev
Author: mcourtot
Date: 2009-10-31 21:52:34 +0000 (Sat, 31 Oct 2009)
Log Message:
-----------
review Melanie
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <mco...@us...> - 2009-10-30 17:35:32
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Revision: 2380
http://obi.svn.sourceforge.net/obi/?rev=2380&view=rev
Author: mcourtot
Date: 2009-10-30 17:35:24 +0000 (Fri, 30 Oct 2009)
Log Message:
-----------
mireoted CHEBI: 472552 5-bromo-2-deoxyuridine and updated OBI_0000664 BrdU incorporation assay. Curator note RESOLVE deleted
Modified Paths:
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trunk/src/ontology/branches/external-byhand.owl
trunk/src/ontology/branches/obi.owl
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From: <lso...@us...> - 2009-10-30 17:04:43
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Revision: 2379
http://obi.svn.sourceforge.net/obi/?rev=2379&view=rev
Author: lsoldatova
Date: 2009-10-30 17:04:24 +0000 (Fri, 30 Oct 2009)
Log Message:
-----------
updates on lss use case + cleaning
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <jzh...@us...> - 2009-10-30 09:52:21
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Revision: 2378
http://obi.svn.sourceforge.net/obi/?rev=2378&view=rev
Author: jzheng24
Date: 2009-10-30 09:52:12 +0000 (Fri, 30 Oct 2009)
Log Message:
-----------
update Ontology terms table
Check the OBI terms used in the content and three diagrams
Check the consistency of figures
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS-terms.xls
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <mco...@us...> - 2009-10-29 22:13:26
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Revision: 2377
http://obi.svn.sourceforge.net/obi/?rev=2377&view=rev
Author: mcourtot
Date: 2009-10-29 22:13:16 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
reviewed Alan's changes
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <al...@us...> - 2009-10-29 06:29:40
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Revision: 2376
http://obi.svn.sourceforge.net/obi/?rev=2376&view=rev
Author: alanr
Date: 2009-10-29 06:29:33 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
A gazillion edits. Of particular importance are the ones that describe
technical bits of OBI - there were a bunch of errors.
But I've also edited for english.
And left a number of comments.
I suggest review of the descriptions of the use cases to see whether
changes I made necessitate changes to the figures, which I did not
have time to review.
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <mco...@us...> - 2009-10-29 03:46:48
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Revision: 2375
http://obi.svn.sourceforge.net/obi/?rev=2375&view=rev
Author: mcourtot
Date: 2009-10-29 03:46:41 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
we don't delete classes metadata just because there is a typo :) (light emission corrected)
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-29 03:29:25
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Revision: 2374
http://obi.svn.sourceforge.net/obi/?rev=2374&view=rev
Author: bjoernpeters
Date: 2009-10-29 03:29:13 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
obsoleted 'antibody role' and reference to it. updated PBS buffer curation status to be in line with Table in manuscript.
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-29 02:28:01
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Revision: 2373
http://obi.svn.sourceforge.net/obi/?rev=2373&view=rev
Author: alanr
Date: 2009-10-29 02:27:55 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
closing https://sourceforge.net/tracker/?func=detail&aid=2881818&group_id=177891&atid=886178
Modified Paths:
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trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-29 02:20:56
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Revision: 2372
http://obi.svn.sourceforge.net/obi/?rev=2372&view=rev
Author: alanr
Date: 2009-10-29 02:20:50 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
delete
Removed Paths:
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trunk/src/ontology/branches/conferred-quality.owl
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From: <al...@us...> - 2009-10-29 02:14:34
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Revision: 2371
http://obi.svn.sourceforge.net/obi/?rev=2371&view=rev
Author: alanr
Date: 2009-10-29 02:14:22 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
sorted editor notes. See http://obi-ontology.org/page/Releases/2009-11-06/Cleanup_log#What_was_done_to_editor_notes. Also decomposed classes at top level so they appear in tree. Also cleaned up some obsolete classes.
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-29 01:21:05
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Revision: 2370
http://obi.svn.sourceforge.net/obi/?rev=2370&view=rev
Author: mcourtot
Date: 2009-10-29 01:20:57 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
updated competing interests statement
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <mco...@us...> - 2009-10-29 00:57:07
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Revision: 2369
http://obi.svn.sourceforge.net/obi/?rev=2369&view=rev
Author: mcourtot
Date: 2009-10-29 00:56:55 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
removed authors comment
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <mco...@us...> - 2009-10-29 00:55:14
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Revision: 2368
http://obi.svn.sourceforge.net/obi/?rev=2368&view=rev
Author: mcourtot
Date: 2009-10-29 00:55:08 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
that's it for today
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <mco...@us...> - 2009-10-29 00:53:51
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Revision: 2367
http://obi.svn.sourceforge.net/obi/?rev=2367&view=rev
Author: mcourtot
Date: 2009-10-29 00:53:40 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
review up to figures
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <mco...@us...> - 2009-10-29 00:38:45
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Revision: 2366
http://obi.svn.sourceforge.net/obi/?rev=2366&view=rev
Author: mcourtot
Date: 2009-10-29 00:38:30 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
reviewed robot use case - still editing!
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <mco...@us...> - 2009-10-29 00:32:53
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Revision: 2365
http://obi.svn.sourceforge.net/obi/?rev=2365&view=rev
Author: mcourtot
Date: 2009-10-29 00:32:39 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
vaccine use case review - still editing
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <mco...@us...> - 2009-10-29 00:21:52
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Revision: 2364
http://obi.svn.sourceforge.net/obi/?rev=2364&view=rev
Author: mcourtot
Date: 2009-10-29 00:21:44 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
reviewed neruoscience use case. Still editing! :)
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <mco...@us...> - 2009-10-29 00:06:20
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Revision: 2363
http://obi.svn.sourceforge.net/obi/?rev=2363&view=rev
Author: mcourtot
Date: 2009-10-29 00:06:13 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
merged with JT out of sync version
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <jes...@us...> - 2009-10-28 23:31:04
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Revision: 2362
http://obi.svn.sourceforge.net/obi/?rev=2362&view=rev
Author: jessicaturner
Date: 2009-10-28 23:30:47 +0000 (Wed, 28 Oct 2009)
Log Message:
-----------
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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