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From: <al...@us...> - 2008-04-07 05:05:38
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Revision: 510
http://obi.svn.sourceforge.net/obi/?rev=510&view=rev
Author: alanr
Date: 2008-04-06 22:05:42 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
continue svn reorg
Added Paths:
-----------
trunk/src/ontology/external/
trunk/src/ontology/external/bfo.owl
trunk/src/ontology/external/bfo11.owl
Removed Paths:
-------------
branchDevelopment/trunk/bfo/bfo.owl
branchDevelopment/trunk/bfo/bfo11.owl
branchDevelopment/trunk/external/
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From: <al...@us...> - 2008-04-07 05:01:47
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Revision: 509
http://obi.svn.sourceforge.net/obi/?rev=509&view=rev
Author: alanr
Date: 2008-04-06 22:01:52 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
continue svn reorg
Added Paths:
-----------
trunk/obsolete/oldrelease/
Removed Paths:
-------------
ontology/trunk/
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From: <al...@us...> - 2008-04-07 05:00:16
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Revision: 508
http://obi.svn.sourceforge.net/obi/?rev=508&view=rev
Author: alanr
Date: 2008-04-06 22:00:22 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
continue svn reorg
Added Paths:
-----------
trunk/obsolete/older/
trunk/obsolete/spreadsheets-exported/
trunk/src/ontology/
trunk/src/ontology/spreadsheets/
trunk/src/ontology/spreadsheets/in/
Removed Paths:
-------------
branchDevelopment/trunk/spreadsheets-imported/
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From: <al...@us...> - 2008-04-07 04:56:15
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Revision: 507
http://obi.svn.sourceforge.net/obi/?rev=507&view=rev
Author: alanr
Date: 2008-04-06 21:56:17 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
continue svn reorg
Removed Paths:
-------------
branchDevelopment/trunk/older/
branchDevelopment/trunk/spreadsheets-exported/
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From: <al...@us...> - 2008-04-07 04:51:38
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Revision: 506
http://obi.svn.sourceforge.net/obi/?rev=506&view=rev
Author: alanr
Date: 2008-04-06 21:51:43 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
continue svn reorg
Added Paths:
-----------
trunk/src/examples/
trunk/src/examples/development/
trunk/src/examples/development/obi-liver.owl
trunk/src/examples/development/object-top-level/
trunk/src/examples/development/object-top-level/NoCollectiveConstitutes.owl
trunk/src/examples/development/object-top-level/bjoern-petri-dish.owl
trunk/src/examples/development/object-top-level/collectivity-demo.owl
trunk/src/examples/development/object-top-level/petri-dish.owl
trunk/src/examples/development/reasoner-example-workshop-2007-July.owl
Removed Paths:
-------------
branchDevelopment/branches/
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From: <al...@us...> - 2008-04-07 04:51:28
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Revision: 505
http://obi.svn.sourceforge.net/obi/?rev=505&view=rev
Author: alanr
Date: 2008-04-06 21:51:27 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
continue svn reorg
Removed Paths:
-------------
branchDevelopment/trunk/development-examples/NoCollectiveConstitutes.owl
branchDevelopment/trunk/development-examples/TheOntologyOfObjects/
branchDevelopment/trunk/development-examples/bjoern-petri-dish.owl
branchDevelopment/trunk/development-examples/collectivity-demo.owl
branchDevelopment/trunk/development-examples/obi-liver.owl
branchDevelopment/trunk/development-examples/petri-dish.owl
branchDevelopment/trunk/development-examples/reasoner-example-workshop-2007-July.owl
branchDevelopment/trunk/sourcecodes/OBIReleaseClient.java
branchDevelopment/trunk/sourcecodes/OBITools/
branchDevelopment/trunk/sourcecodes/OBIreleaseCheck.sh
branchDevelopment/trunk/sourcecodes/add-disjoints.lisp
branchDevelopment/trunk/sourcecodes/denrie-sheet-importer.lisp
branchDevelopment/trunk/sourcecodes/gather-class-uris.pl
branchDevelopment/trunk/sourcecodes/get-svn-revision.sh
branchDevelopment/trunk/sourcecodes/join-branches.pl
branchDevelopment/trunk/sourcecodes/loading-obi-into-neurocommons.txt
branchDevelopment/trunk/sourcecodes/make-all-in-one.pl
branchDevelopment/trunk/sourcecodes/modify-uris.pl
branchDevelopment/trunk/sourcecodes/new-purls.lisp
branchDevelopment/trunk/sourcecodes/normalize-namespaces.pl
branchDevelopment/trunk/sourcecodes/obi.asd
branchDevelopment/trunk/sourcecodes/qc-queries.lisp
branchDevelopment/trunk/sourcecodes/sheet-importer.lisp
branchDevelopment/trunk/sourcecodes/uri-report.lisp
branchDevelopment/trunk/sourcecodes/write-purls.lisp
branchDevelopment/trunk/sourcecodes/xl2owl/
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From: <al...@us...> - 2008-04-07 04:44:45
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Revision: 504
http://obi.svn.sourceforge.net/obi/?rev=504&view=rev
Author: alanr
Date: 2008-04-06 21:44:50 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
continue svn reorg
Added Paths:
-----------
trunk/bin/
trunk/bin/xl2owl/
trunk/src/tools/format-converters/xl2owl/
trunk/src/tools/format-converters/xl2owl/Example.txt
trunk/src/tools/format-converters/xl2owl/README
trunk/src/tools/format-converters/xl2owl/xl2owl.pl
trunk/src/tools/format-converters/xl2owl.pl
Removed Paths:
-------------
trunk/bin/xl2owl/Example.txt
trunk/bin/xl2owl/README
trunk/bin/xl2owl/xl2owl.pl
trunk/src/tools/xl2owl/
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From: <al...@us...> - 2008-04-07 04:39:22
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Revision: 503
http://obi.svn.sourceforge.net/obi/?rev=503&view=rev
Author: alanr
Date: 2008-04-06 21:39:28 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
continue svn reorg
Added Paths:
-----------
trunk/src/
trunk/src/tools/
trunk/src/tools/format-converters/
trunk/src/tools/write-purls.lisp
Removed Paths:
-------------
trunk/src/tools/write-purls.lisp
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From: <al...@us...> - 2008-04-07 04:28:47
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Revision: 502
http://obi.svn.sourceforge.net/obi/?rev=502&view=rev
Author: alanr
Date: 2008-04-06 21:28:50 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
starting to rearrange to conform with new svn structure
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/write-purls.lisp
Added Paths:
-----------
branches/
tags/
trunk/
trunk/obsolete/
trunk/obsolete/tools/
Removed Paths:
-------------
branchDevelopment/tags/
tools/
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From: <p_r...@us...> - 2008-04-06 20:04:09
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Revision: 501
http://obi.svn.sourceforge.net/obi/?rev=501&view=rev
Author: p_rocca_serra
Date: 2008-04-06 13:03:57 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
addition of restriction on comet assay and pcr-sscp assay (input and output)
Modified Paths:
--------------
branchDevelopment/trunk/PlanAndPlannedProcess.owl
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From: <p_r...@us...> - 2008-04-06 19:50:18
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Revision: 500
http://obi.svn.sourceforge.net/obi/?rev=500&view=rev
Author: p_rocca_serra
Date: 2008-04-06 12:50:17 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
Modified Paths:
--------------
branchDevelopment/trunk/Obsolete.owl
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From: <p_r...@us...> - 2008-04-06 19:49:57
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Revision: 499
http://obi.svn.sourceforge.net/obi/?rev=499&view=rev
Author: p_rocca_serra
Date: 2008-04-06 12:49:39 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
addition of 2 classes under assay:comet assay and pcr-sscp assay-> metadata complete
addition of restriction on assay: all assay must have a device
Plan: definition and metadata added
Algorithm: definition and metadata added:Note[I don't like algorithm as a child of specification: to me it remains a place but I have left it in place->to be discussed
Protocol: definition and metadata added
Study Design: addition of metadata (all missing example-of-usage except N-to-1 design and hyper-greaco-design: (those might be removed due to very low frequency in pubmed)
Modified Paths:
--------------
branchDevelopment/trunk/PlanAndPlannedProcess.owl
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From: <p_r...@us...> - 2008-04-06 19:45:23
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Revision: 498
http://obi.svn.sourceforge.net/obi/?rev=498&view=rev
Author: p_rocca_serra
Date: 2008-04-06 12:45:18 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
addition of solvent/solute roles
Modified Paths:
--------------
branchDevelopment/trunk/Role.owl
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From: <p_r...@us...> - 2008-04-06 16:42:52
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Revision: 497
http://obi.svn.sourceforge.net/obi/?rev=497&view=rev
Author: p_rocca_serra
Date: 2008-04-06 09:42:52 -0700 (Sun, 06 Apr 2008)
Log Message:
-----------
Addition of Definition for Protocol and Algorithm classes
Addition of example_of_usage Metadata to several study design
Addition of curation status metadata where appropriate
Modified Paths:
--------------
branchDevelopment/trunk/PlanAndPlannedProcess.owl
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From: <p_r...@us...> - 2008-04-05 22:50:32
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Revision: 496
http://obi.svn.sourceforge.net/obi/?rev=496&view=rev
Author: p_rocca_serra
Date: 2008-04-05 15:50:37 -0700 (Sat, 05 Apr 2008)
Log Message:
-----------
Modified Paths:
--------------
branchDevelopment/trunk/Obsolete.owl
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From: <p_r...@us...> - 2008-04-05 22:50:14
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Revision: 495
http://obi.svn.sourceforge.net/obi/?rev=495&view=rev
Author: p_rocca_serra
Date: 2008-04-05 15:50:19 -0700 (Sat, 05 Apr 2008)
Log Message:
-----------
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
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From: <p_r...@us...> - 2008-04-05 22:49:56
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Revision: 494
http://obi.svn.sourceforge.net/obi/?rev=494&view=rev
Author: p_rocca_serra
Date: 2008-04-05 15:50:01 -0700 (Sat, 05 Apr 2008)
Log Message:
-----------
addition of buffer role
Modified Paths:
--------------
branchDevelopment/trunk/Role.owl
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From: <p_r...@us...> - 2008-04-05 22:44:38
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Revision: 493
http://obi.svn.sourceforge.net/obi/?rev=493&view=rev
Author: p_rocca_serra
Date: 2008-04-05 15:44:42 -0700 (Sat, 05 Apr 2008)
Log Message:
-----------
Modified Paths:
--------------
branchDevelopment/trunk/Obsolete.owl
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From: <p_r...@us...> - 2008-04-05 22:43:35
|
Revision: 492
http://obi.svn.sourceforge.net/obi/?rev=492&view=rev
Author: p_rocca_serra
Date: 2008-04-05 15:43:41 -0700 (Sat, 05 Apr 2008)
Log Message:
-----------
molecular mixture moved to obsolete
liquid chemical moved to obsolete (replaced by solution of chemicals)
moved to relations? moved to obsolete
Epstein Barr virus transformed cell moved to _defined class is needed
immortalized cell line :ditto
creation of solution of chemicals: metadata complete
phosphate buffer saline solution renamed and moved as child of solution of chemical
addition of restriction has role (buffer role)+ correction of metadata
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
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From: <mco...@us...> - 2008-04-05 17:35:36
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Revision: 491
http://obi.svn.sourceforge.net/obi/?rev=491&view=rev
Author: mcourtot
Date: 2008-04-05 10:35:42 -0700 (Sat, 05 Apr 2008)
Log Message:
-----------
notes from developers call 20080402
Added Paths:
-----------
web/trunk/htdocs/notes/developers/2008/20080402.txt
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From: <mco...@us...> - 2008-04-04 21:59:38
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Revision: 490
http://obi.svn.sourceforge.net/obi/?rev=490&view=rev
Author: mcourtot
Date: 2008-04-04 14:59:44 -0700 (Fri, 04 Apr 2008)
Log Message:
-----------
removed extra label for test synthetic peptide that crept in
Modified Paths:
--------------
branchDevelopment/trunk/DataTransformation.owl
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From: <p_r...@us...> - 2008-04-04 21:41:37
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Revision: 489
http://obi.svn.sourceforge.net/obi/?rev=489&view=rev
Author: p_rocca_serra
Date: 2008-04-04 14:41:39 -0700 (Fri, 04 Apr 2008)
Log Message:
-----------
moved from _biomaterial_deprecated under material + creation of restriction has_role some (reagent_role or specimen_role)
obsoleted _move_to relation, move_to_site
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/Obsolete.owl
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From: <mco...@us...> - 2008-04-04 20:49:04
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Revision: 488
http://obi.svn.sourceforge.net/obi/?rev=488&view=rev
Author: mcourtot
Date: 2008-04-04 13:49:09 -0700 (Fri, 04 Apr 2008)
Log Message:
-----------
shell script to get the latest SVN revision number from the server
Added Paths:
-----------
branchDevelopment/trunk/sourcecodes/get-svn-revision.sh
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From: <jam...@us...> - 2008-04-04 10:19:37
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Revision: 487
http://obi.svn.sourceforge.net/obi/?rev=487&view=rev
Author: jamesmalone
Date: 2008-04-04 03:19:42 -0700 (Fri, 04 Apr 2008)
Log Message:
-----------
Update to Loess group definitions, and "data set" term usage. Couple of other minor fixes.
Modified Paths:
--------------
branchDevelopment/trunk/DataTransformation.owl
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From: <mco...@us...> - 2008-04-03 15:57:34
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Revision: 486
http://obi.svn.sourceforge.net/obi/?rev=486&view=rev
Author: mcourtot
Date: 2008-04-03 08:57:35 -0700 (Thu, 03 Apr 2008)
Log Message:
-----------
corrected namespace form digitalEntityplus to dataFormatSpecification
Modified Paths:
--------------
branchDevelopment/trunk/DataFormatSpecification.owl
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