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From: <jgr...@us...> - 2008-04-26 02:10:05
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Revision: 560
http://obi.svn.sourceforge.net/obi/?rev=560&view=rev
Author: jgreenbaum
Date: 2008-04-25 19:10:10 -0700 (Fri, 25 Apr 2008)
Log Message:
-----------
# * Fixed handling of classes, where now URI is specified - class gets prepeneded with base URI
# * Found bug w/r/t handling of owl disjoints. Information is lost in conversion to spreadsheet...will fix next week
Modified Paths:
--------------
trunk/src/tools/format-converters/xl2owl/xl2owl.pl
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From: <jgr...@us...> - 2008-04-25 23:48:03
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Revision: 559
http://obi.svn.sourceforge.net/obi/?rev=559&view=rev
Author: jgreenbaum
Date: 2008-04-25 16:48:06 -0700 (Fri, 25 Apr 2008)
Log Message:
-----------
* Fixed xl2owl.pl to handle purls
* Added ability to handle owl:equivalentClass tags
* Updated Windows & Linux binaries - OS X not upated yet
* Updated README file
Modified Paths:
--------------
trunk/bin/linux/xl2owl
trunk/bin/windows/xl2owl.exe
trunk/src/tools/format-converters/xl2owl/README
trunk/src/tools/format-converters/xl2owl/xl2owl.pl
Removed Paths:
-------------
trunk/src/tools/format-converters/xl2owl.pl
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From: <mco...@us...> - 2008-04-24 01:38:17
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Revision: 558
http://obi.svn.sourceforge.net/obi/?rev=558&view=rev
Author: mcourtot
Date: 2008-04-23 18:38:14 -0700 (Wed, 23 Apr 2008)
Log Message:
-----------
modified annotation properties - gets them on the whole merged model
added default value for warnings
Modified Paths:
--------------
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/BranchesReporter.java
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From: <al...@us...> - 2008-04-24 01:07:13
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Revision: 557
http://obi.svn.sourceforge.net/obi/?rev=557&view=rev
Author: alanr
Date: 2008-04-23 18:07:06 -0700 (Wed, 23 Apr 2008)
Log Message:
-----------
fix protege mangling
Modified Paths:
--------------
trunk/src/ontology/branches/AnnotationProperty.owl
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From: <mco...@us...> - 2008-04-23 23:12:08
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Revision: 556
http://obi.svn.sourceforge.net/obi/?rev=556&view=rev
Author: mcourtot
Date: 2008-04-23 16:12:14 -0700 (Wed, 23 Apr 2008)
Log Message:
-----------
added notes dev call 20080423
Added Paths:
-----------
web/trunk/htdocs/notes/developers/2008/20080423.txt
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From: <al...@us...> - 2008-04-23 05:37:39
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Revision: 555
http://obi.svn.sourceforge.net/obi/?rev=555&view=rev
Author: alanr
Date: 2008-04-22 22:37:45 -0700 (Tue, 22 Apr 2008)
Log Message:
-----------
cures to some of the ills reported by Melanie's excellent checker
Modified Paths:
--------------
trunk/src/ontology/branches/AnnotationProperty.owl
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From: <al...@us...> - 2008-04-23 04:47:27
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Revision: 554
http://obi.svn.sourceforge.net/obi/?rev=554&view=rev
Author: alanr
Date: 2008-04-22 21:47:34 -0700 (Tue, 22 Apr 2008)
Log Message:
-----------
update - changes to svn, content
Modified Paths:
--------------
trunk/src/ontology/branches/obi-lsw.owl.template
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From: <al...@us...> - 2008-04-23 04:29:43
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Revision: 553
http://obi.svn.sourceforge.net/obi/?rev=553&view=rev
Author: alanr
Date: 2008-04-22 21:29:46 -0700 (Tue, 22 Apr 2008)
Log Message:
-----------
Make number obsolete
Modified Paths:
--------------
trunk/src/ontology/branches/Obsolete.owl
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From: <mco...@us...> - 2008-04-23 00:01:11
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Revision: 552
http://obi.svn.sourceforge.net/obi/?rev=552&view=rev
Author: mcourtot
Date: 2008-04-22 17:00:53 -0700 (Tue, 22 Apr 2008)
Log Message:
-----------
added comment non empty check: will display a warning if the rdfs:comment field of a term is not empty
Modified Paths:
--------------
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/BranchesReporter.java
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From: <mco...@us...> - 2008-04-22 22:52:42
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Revision: 551
http://obi.svn.sourceforge.net/obi/?rev=551&view=rev
Author: mcourtot
Date: 2008-04-22 15:52:33 -0700 (Tue, 22 Apr 2008)
Log Message:
-----------
java class cehcking metadata and producing an error report
1. warnings
- no label or no preferred term
- no curation status
- no definition editor
2. criticals
- no label and no preferred term
- several labels or several preferred terms
- no definition or several definitions
- several curation status
- no definition source
Added Paths:
-----------
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/BranchesReporter.java
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From: <jam...@us...> - 2008-04-18 15:25:56
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Revision: 550
http://obi.svn.sourceforge.net/obi/?rev=550&view=rev
Author: jamesmalone
Date: 2008-04-18 08:25:51 -0700 (Fri, 18 Apr 2008)
Log Message:
-----------
Annotation property update
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <bjo...@us...> - 2008-04-17 18:29:20
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Revision: 549
http://obi.svn.sourceforge.net/obi/?rev=549&view=rev
Author: bjoernpeters
Date: 2008-04-17 11:28:43 -0700 (Thu, 17 Apr 2008)
Log Message:
-----------
lavage and histology preparation term added
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
Property Changed:
----------------
trunk/src/ontology/branches/
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From: <mco...@us...> - 2008-04-17 15:40:47
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Revision: 548
http://obi.svn.sourceforge.net/obi/?rev=548&view=rev
Author: mcourtot
Date: 2008-04-17 08:40:48 -0700 (Thu, 17 Apr 2008)
Log Message:
-----------
added DT directory
Added Paths:
-----------
trunk/docs/developer/DT/
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From: <mco...@us...> - 2008-04-17 01:12:56
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Revision: 547
http://obi.svn.sourceforge.net/obi/?rev=547&view=rev
Author: mcourtot
Date: 2008-04-16 18:13:01 -0700 (Wed, 16 Apr 2008)
Log Message:
-----------
corrected path mistake...
Modified Paths:
--------------
trunk/src/tools/build/OBIrelease.sh
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From: <mco...@us...> - 2008-04-17 00:27:03
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Revision: 546
http://obi.svn.sourceforge.net/obi/?rev=546&view=rev
Author: mcourtot
Date: 2008-04-16 17:27:04 -0700 (Wed, 16 Apr 2008)
Log Message:
-----------
added co from svn for lsw, OBITools.jar and initial setup
Modified Paths:
--------------
trunk/src/tools/build/OBIrelease.sh
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From: <al...@us...> - 2008-04-12 07:00:38
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Revision: 545
http://obi.svn.sourceforge.net/obi/?rev=545&view=rev
Author: alanr
Date: 2008-04-12 00:00:38 -0700 (Sat, 12 Apr 2008)
Log Message:
-----------
redirect purls
Modified Paths:
--------------
tags/releases/2008-03-10/merged/new-purls2.xml
tags/releases/2008-03-10/merged/new-purls3.xml
tags/releases/2008-03-10/merged/new-purls4.xml
tags/releases/2008-03-10/merged/new-purls5.xml
tags/releases/2008-03-10/merged/new-purls6.xml
tags/releases/2008-03-10/merged/new-purls7.xml
tags/releases/2008-03-10/merged/new-purls8.xml
tags/releases/2008-03-10/merged/new-purls9.xml
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From: <al...@us...> - 2008-04-12 06:48:43
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Revision: 544
http://obi.svn.sourceforge.net/obi/?rev=544&view=rev
Author: alanr
Date: 2008-04-11 23:45:29 -0700 (Fri, 11 Apr 2008)
Log Message:
-----------
redirect purls
Modified Paths:
--------------
tags/releases/2008-03-10/merged/new-purls.xml
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From: <al...@us...> - 2008-04-11 20:38:49
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Revision: 543
http://obi.svn.sourceforge.net/obi/?rev=543&view=rev
Author: alanr
Date: 2008-04-11 13:38:44 -0700 (Fri, 11 Apr 2008)
Log Message:
-----------
add info about jax strains
Added Paths:
-----------
trunk/src/ontology/catalogs/
trunk/src/ontology/catalogs/jax-strains-email.txt
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From: <mco...@us...> - 2008-04-09 22:58:12
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Revision: 542
http://obi.svn.sourceforge.net/obi/?rev=542&view=rev
Author: mcourtot
Date: 2008-04-09 15:58:06 -0700 (Wed, 09 Apr 2008)
Log Message:
-----------
added info about general purl and version specific purl
Modified Paths:
--------------
trunk/docs/user/release_notes.html
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From: <mco...@us...> - 2008-04-09 18:47:03
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Revision: 541
http://obi.svn.sourceforge.net/obi/?rev=541&view=rev
Author: mcourtot
Date: 2008-04-09 11:46:44 -0700 (Wed, 09 Apr 2008)
Log Message:
-----------
release notes updated: changelog, removed date specific items in introduction
Modified Paths:
--------------
trunk/docs/user/release_notes.html
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From: <all...@us...> - 2008-04-09 07:48:25
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Revision: 540
http://obi.svn.sourceforge.net/obi/?rev=540&view=rev
Author: allysonlister
Date: 2008-04-09 00:48:26 -0700 (Wed, 09 Apr 2008)
Log Message:
-----------
Added Elisabetta Manduchi to the developer's working group, and made everyone alphabetical again in that section, and removed an extraneous space.
Modified Paths:
--------------
web/trunk/htdocs/consortium/index.php
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From: <al...@us...> - 2008-04-09 01:32:17
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Revision: 539
http://obi.svn.sourceforge.net/obi/?rev=539&view=rev
Author: alanr
Date: 2008-04-08 18:32:23 -0700 (Tue, 08 Apr 2008)
Log Message:
-----------
another ci another link
Modified Paths:
--------------
trunk/docs/user/release_notes.html
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From: <al...@us...> - 2008-04-09 01:29:47
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Revision: 538
http://obi.svn.sourceforge.net/obi/?rev=538&view=rev
Author: alanr
Date: 2008-04-08 18:29:53 -0700 (Tue, 08 Apr 2008)
Log Message:
-----------
htmlify release notes
Added Paths:
-----------
trunk/docs/user/release_notes.html
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From: <mco...@us...> - 2008-04-08 22:20:24
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Revision: 537
http://obi.svn.sourceforge.net/obi/?rev=537&view=rev
Author: mcourtot
Date: 2008-04-08 15:20:26 -0700 (Tue, 08 Apr 2008)
Log Message:
-----------
shell script producing the release version 0.1
Added Paths:
-----------
trunk/src/tools/build/OBIrelease.sh
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From: <al...@us...> - 2008-04-08 20:19:11
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Revision: 536
http://obi.svn.sourceforge.net/obi/?rev=536&view=rev
Author: alanr
Date: 2008-04-08 13:19:14 -0700 (Tue, 08 Apr 2008)
Log Message:
-----------
copy to release
Added Paths:
-----------
tags/releases/2008-04-08/branches/
tags/releases/2008-04-08/build/
tags/releases/2008-04-08/external/
tags/releases/2008-04-08/obi-lsw-report.html
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