Menu
▾
▴
obi-svn-commit — Mailing list to receive notices of commits to the OBI SVN.
You can subscribe to this list here.
| 2007 |
Jan
|
Feb
|
Mar
|
Apr
(3) |
May
(6) |
Jun
(29) |
Jul
(37) |
Aug
(20) |
Sep
(9) |
Oct
(24) |
Nov
(14) |
Dec
(39) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2008 |
Jan
(61) |
Feb
(64) |
Mar
(118) |
Apr
(92) |
May
(130) |
Jun
(106) |
Jul
(86) |
Aug
(32) |
Sep
(65) |
Oct
(126) |
Nov
(125) |
Dec
(82) |
| 2009 |
Jan
(118) |
Feb
(99) |
Mar
(140) |
Apr
(30) |
May
(25) |
Jun
(43) |
Jul
(152) |
Aug
(130) |
Sep
(43) |
Oct
(285) |
Nov
(214) |
Dec
(96) |
| 2010 |
Jan
(44) |
Feb
(26) |
Mar
(143) |
Apr
(24) |
May
(36) |
Jun
(42) |
Jul
(12) |
Aug
(29) |
Sep
(7) |
Oct
(24) |
Nov
(6) |
Dec
(27) |
| 2011 |
Jan
(4) |
Feb
(6) |
Mar
(28) |
Apr
(37) |
May
(27) |
Jun
(25) |
Jul
(68) |
Aug
(14) |
Sep
(8) |
Oct
(36) |
Nov
(10) |
Dec
(33) |
| 2012 |
Jan
(56) |
Feb
(14) |
Mar
(32) |
Apr
(22) |
May
(35) |
Jun
(41) |
Jul
(66) |
Aug
(1) |
Sep
(7) |
Oct
(6) |
Nov
(6) |
Dec
(4) |
| 2013 |
Jan
(9) |
Feb
(5) |
Mar
(21) |
Apr
(18) |
May
(24) |
Jun
(33) |
Jul
(4) |
Aug
(7) |
Sep
(17) |
Oct
(50) |
Nov
(18) |
Dec
(10) |
| 2014 |
Jan
(1) |
Feb
(3) |
Mar
(12) |
Apr
(2) |
May
(2) |
Jun
(2) |
Jul
|
Aug
(4) |
Sep
(2) |
Oct
(1) |
Nov
(3) |
Dec
(9) |
| 2015 |
Jan
(6) |
Feb
(2) |
Mar
(15) |
Apr
(2) |
May
(5) |
Jun
(4) |
Jul
(2) |
Aug
(5) |
Sep
(8) |
Oct
(3) |
Nov
(9) |
Dec
(18) |
| 2016 |
Jan
(3) |
Feb
(2) |
Mar
(15) |
Apr
(1) |
May
(4) |
Jun
(10) |
Jul
(2) |
Aug
(2) |
Sep
(5) |
Oct
(5) |
Nov
|
Dec
|
| 2017 |
Jan
(4) |
Feb
|
Mar
|
Apr
|
May
|
Jun
|
Jul
|
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
|
From: <al...@us...> - 2008-08-22 02:49:07
|
Revision: 911
http://obi.svn.sourceforge.net/obi/?rev=911&view=rev
Author: alanr
Date: 2008-08-22 02:49:16 +0000 (Fri, 22 Aug 2008)
Log Message:
-----------
assumed-individuals file for previous release, for Daniel and other interested
Added Paths:
-----------
releases/2008-07-25/branches/assumed-individuals.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-08-22 02:46:49
|
Revision: 910
http://obi.svn.sourceforge.net/obi/?rev=910&view=rev
Author: alanr
Date: 2008-08-22 02:46:58 +0000 (Fri, 22 Aug 2008)
Log Message:
-----------
docs on branches dir from Melanie.
Added Paths:
-----------
trunk/docs/developer/about-branches-directory.txt
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <bjo...@us...> - 2008-08-21 17:06:31
|
Revision: 909
http://obi.svn.sourceforge.net/obi/?rev=909&view=rev
Author: bjoernpeters
Date: 2008-08-21 17:06:40 +0000 (Thu, 21 Aug 2008)
Log Message:
-----------
added logical relations to the p and p p branch.
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <bjo...@us...> - 2008-08-21 16:01:13
|
Revision: 908
http://obi.svn.sourceforge.net/obi/?rev=908&view=rev
Author: bjoernpeters
Date: 2008-08-21 16:01:21 +0000 (Thu, 21 Aug 2008)
Log Message:
-----------
pprj template updated to display all labels correctly in Protege 3.4 beta (including curation status).
Some minor changes to connect objectives and plans.
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/obi.pprj.template
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2008-08-20 16:10:49
|
Revision: 907
http://obi.svn.sourceforge.net/obi/?rev=907&view=rev
Author: jamesmalone
Date: 2008-08-20 16:10:58 +0000 (Wed, 20 Aug 2008)
Log Message:
-----------
Edits made during the OBI use case call, addition of recombinant plasmid construction, recombinant plasmid, viral rna extraction, removal of is_manufactured_by axiom from artefact object.
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <fgi...@us...> - 2008-08-19 11:42:38
|
Revision: 906
http://obi.svn.sourceforge.net/obi/?rev=906&view=rev
Author: fgibson_sf
Date: 2008-08-19 11:42:47 +0000 (Tue, 19 Aug 2008)
Log Message:
-----------
Edit of index.php for re-direction to new wiki
Modified Paths:
--------------
web/trunk/htdocs/index.php
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <fgi...@us...> - 2008-08-19 11:16:28
|
Revision: 905
http://obi.svn.sourceforge.net/obi/?rev=905&view=rev
Author: fgibson_sf
Date: 2008-08-19 11:16:36 +0000 (Tue, 19 Aug 2008)
Log Message:
-----------
Removed strange duplication of objective_specfication in the DigitalEntityPlus.owl, source of duplication unknown.....
Modified Paths:
--------------
trunk/src/ontology/branches/DigitalEntityPlus.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <bjo...@us...> - 2008-08-18 21:16:11
|
Revision: 904
http://obi.svn.sourceforge.net/obi/?rev=904&view=rev
Author: bjoernpeters
Date: 2008-08-18 21:16:16 +0000 (Mon, 18 Aug 2008)
Log Message:
-----------
added input and outputs to several protocol applications
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <mco...@us...> - 2008-08-18 15:27:39
|
Revision: 903
http://obi.svn.sourceforge.net/obi/?rev=903&view=rev
Author: mcourtot
Date: 2008-08-18 15:27:45 +0000 (Mon, 18 Aug 2008)
Log Message:
-----------
file from Alan as requested
Added Paths:
-----------
trunk/docs/developer/sourceforge-backups/obi-mboxes.tar.gz
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2008-08-18 13:37:07
|
Revision: 902
http://obi.svn.sourceforge.net/obi/?rev=902&view=rev
Author: jamesmalone
Date: 2008-08-18 13:37:16 +0000 (Mon, 18 Aug 2008)
Log Message:
-----------
Addition of some axioms to some of the data transformations corresponding to data transformation objectives and additional defined classes to classify them.
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2008-08-18 13:34:59
|
Revision: 901
http://obi.svn.sourceforge.net/obi/?rev=901&view=rev
Author: jamesmalone
Date: 2008-08-18 13:35:07 +0000 (Mon, 18 Aug 2008)
Log Message:
-----------
Noticed I'd accidentally put an EFO ID in the class for partitioning objective - removed it.
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-08-15 02:26:19
|
Revision: 900
http://obi.svn.sourceforge.net/obi/?rev=900&view=rev
Author: alanr
Date: 2008-08-15 02:26:27 +0000 (Fri, 15 Aug 2008)
Log Message:
-----------
backup of tracker data for now, and some documentation
Added Paths:
-----------
trunk/docs/developer/sourceforge-backups/
trunk/docs/developer/sourceforge-backups/how
trunk/docs/developer/sourceforge-backups/xml_export-2008-08-14.xml
trunk/docs/developer/sourceforge-backups/xml_export2-2008-08-14.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <mco...@us...> - 2008-08-13 18:44:14
|
Revision: 899
http://obi.svn.sourceforge.net/obi/?rev=899&view=rev
Author: mcourtot
Date: 2008-08-13 18:44:22 +0000 (Wed, 13 Aug 2008)
Log Message:
-----------
added notes coord call 20080813
Added Paths:
-----------
web/trunk/htdocs/notes/coordinators/20080813.txt
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-08-11 18:34:15
|
Revision: 898
http://obi.svn.sourceforge.net/obi/?rev=898&view=rev
Author: alanr
Date: 2008-08-11 18:34:18 +0000 (Mon, 11 Aug 2008)
Log Message:
-----------
added owled paper, as submited
Added Paths:
-----------
trunk/docs/papers/
trunk/docs/papers/owled2008/
trunk/docs/papers/owled2008/owled2008eu_submission_38.doc
trunk/docs/papers/owled2008/owled2008eu_submission_38.pdf
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <bjo...@us...> - 2008-08-08 17:53:38
|
Revision: 897
http://obi.svn.sourceforge.net/obi/?rev=897&view=rev
Author: bjoernpeters
Date: 2008-08-08 17:53:46 +0000 (Fri, 08 Aug 2008)
Log Message:
-----------
Added requested term 'cell cycle synchronization'
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2008-08-08 16:42:50
|
Revision: 896
http://obi.svn.sourceforge.net/obi/?rev=896&view=rev
Author: jamesmalone
Date: 2008-08-08 16:42:58 +0000 (Fri, 08 Aug 2008)
Log Message:
-----------
Addition of normalization data transformation defined class
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2008-08-08 16:42:17
|
Revision: 895
http://obi.svn.sourceforge.net/obi/?rev=895&view=rev
Author: jamesmalone
Date: 2008-08-08 16:42:26 +0000 (Fri, 08 Aug 2008)
Log Message:
-----------
addition of has_objective relation
Modified Paths:
--------------
trunk/src/ontology/branches/Relations.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2008-08-08 13:55:41
|
Revision: 894
http://obi.svn.sourceforge.net/obi/?rev=894&view=rev
Author: jamesmalone
Date: 2008-08-08 13:55:50 +0000 (Fri, 08 Aug 2008)
Log Message:
-----------
Removal of objective from role.owl and placed into planandplannedprocess.owl.
Fixed naming conventions breach for labels and changed status to metadata incomplete as definition source is missing for most of these classes.
Added new classes:
data transformation objective
partitioning objective
normalization objective
averaging objective
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <fgi...@us...> - 2008-08-05 14:52:19
|
Revision: 893
http://obi.svn.sourceforge.net/obi/?rev=893&view=rev
Author: fgibson_sf
Date: 2008-08-05 14:52:27 +0000 (Tue, 05 Aug 2008)
Log Message:
-----------
stopped the multiple inheritance on flowcytometer also being an optical subsystem. Added new class "instrument by virtue of part" which allows a device to be classified as an instrument if it has a part which has a device that is an instrument
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2008-08-05 13:17:50
|
Revision: 892
http://obi.svn.sourceforge.net/obi/?rev=892&view=rev
Author: jamesmalone
Date: 2008-08-05 13:17:59 +0000 (Tue, 05 Aug 2008)
Log Message:
-----------
Fix to the reoccurring import bug from Protege - removed line which i did not add:
<owl:imports rdf:resource="http://purl.obofoundry.org/obo"/>
big grmmll
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2008-08-05 13:10:05
|
Revision: 891
http://obi.svn.sourceforge.net/obi/?rev=891&view=rev
Author: jamesmalone
Date: 2008-08-05 13:10:14 +0000 (Tue, 05 Aug 2008)
Log Message:
-----------
Spreadsheet update reflecting terms added.
Modified Paths:
--------------
trunk/docs/developer/DT/MM_MultipleTesting_v1.xls
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2008-08-05 13:05:25
|
Revision: 890
http://obi.svn.sourceforge.net/obi/?rev=890&view=rev
Author: jamesmalone
Date: 2008-08-05 13:05:35 +0000 (Tue, 05 Aug 2008)
Log Message:
-----------
Added several multiple testing procedures from Monnie's spreadsheet. Protege crashed 3 times during this editing grmmll.
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jam...@us...> - 2008-08-04 10:05:47
|
Revision: 889
http://obi.svn.sourceforge.net/obi/?rev=889&view=rev
Author: jamesmalone
Date: 2008-08-04 10:05:55 +0000 (Mon, 04 Aug 2008)
Log Message:
-----------
Some edits following dt call
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
trunk/docs/developer/DT/MM_MultipleTesting_v1.xls
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <al...@us...> - 2008-08-01 20:08:30
|
Revision: 888
http://obi.svn.sourceforge.net/obi/?rev=888&view=rev
Author: alanr
Date: 2008-08-01 20:08:38 +0000 (Fri, 01 Aug 2008)
Log Message:
-----------
ontology
Modified Paths:
--------------
trunk/src/ontology/branches/obidi.owl
trunk/src/ontology/branches/obil.owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <jgr...@us...> - 2008-08-01 00:48:31
|
Revision: 887
http://obi.svn.sourceforge.net/obi/?rev=887&view=rev
Author: jgreenbaum
Date: 2008-08-01 00:48:36 +0000 (Fri, 01 Aug 2008)
Log Message:
-----------
* updated xl2owl.pl to bark if input file format is wrong
* update binaries, web server, & README accordingly
Modified Paths:
--------------
trunk/bin/linux/xl2owl
trunk/bin/windows/xl2owl.exe
trunk/src/tools/format-converters/xl2owl/README
trunk/src/tools/format-converters/xl2owl/xl2owl.pl
Added Paths:
-----------
trunk/bin/osx/xl2owl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
