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From: <mco...@us...> - 2008-09-25 18:40:57
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Revision: 966
http://obi.svn.sourceforge.net/obi/?rev=966&view=rev
Author: mcourtot
Date: 2008-09-25 18:40:37 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
removed extra import declarations added by Protege
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <bjo...@us...> - 2008-09-25 17:07:05
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Revision: 965
http://obi.svn.sourceforge.net/obi/?rev=965&view=rev
Author: bjoernpeters
Date: 2008-09-25 17:07:02 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <bjo...@us...> - 2008-09-25 15:40:12
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Revision: 964
http://obi.svn.sourceforge.net/obi/?rev=964&view=rev
Author: bjoernpeters
Date: 2008-09-25 15:40:05 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
Property Changed:
----------------
trunk/src/ontology/branches/
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From: <al...@us...> - 2008-09-25 04:00:52
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Revision: 963
http://obi.svn.sourceforge.net/obi/?rev=963&view=rev
Author: alanr
Date: 2008-09-25 04:00:45 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
obsolete obi_function and '_GO molecular function placeholder'
Modified Paths:
--------------
trunk/src/ontology/branches/OBI-Function.owl
trunk/src/ontology/branches/Obsolete.owl
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From: <dan...@us...> - 2008-09-24 16:21:15
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Revision: 962
http://obi.svn.sourceforge.net/obi/?rev=962&view=rev
Author: daniel_schober
Date: 2008-09-24 16:19:16 +0000 (Wed, 24 Sep 2008)
Log Message:
-----------
added my Endnote library on ontologies, which should have many of the refs we need to cite in the OBI paper.
Added Paths:
-----------
trunk/docs/developer/Endnote Libraries/
trunk/docs/developer/Endnote Libraries/Ontologien.enl
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From: <al...@us...> - 2008-09-24 06:48:07
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Revision: 961
http://obi.svn.sourceforge.net/obi/?rev=961&view=rev
Author: alanr
Date: 2008-09-24 06:47:54 +0000 (Wed, 24 Sep 2008)
Log Message:
-----------
candidate release
Added Paths:
-----------
releases/2008-09-26/
releases/2008-09-26/branches/
releases/2008-09-26/branches/AnnotationProperty.owl
releases/2008-09-26/branches/Biomaterial.owl
releases/2008-09-26/branches/DataFormatSpecification.owl
releases/2008-09-26/branches/DataTransformation.owl
releases/2008-09-26/branches/DigitalEntityPlus.owl
releases/2008-09-26/branches/InstrumentAndPart.owl
releases/2008-09-26/branches/OBI-Function.owl
releases/2008-09-26/branches/Obsolete.owl
releases/2008-09-26/branches/PlanAndPlannedProcess.owl
releases/2008-09-26/branches/Quality.owl
releases/2008-09-26/branches/Relations.owl
releases/2008-09-26/branches/Role.owl
releases/2008-09-26/branches/TheRest.owl
releases/2008-09-26/branches/assumed-individuals.owl
releases/2008-09-26/branches/disjoints.owl
releases/2008-09-26/branches/external.owl
releases/2008-09-26/branches/externalDerived.owl
releases/2008-09-26/branches/inferred-superclasses.owl
releases/2008-09-26/branches/obi-owl-full.owl
releases/2008-09-26/branches/obi.owl
releases/2008-09-26/branches/obi.repository
releases/2008-09-26/branches/obid.owl
releases/2008-09-26/branches/obidi.owl
releases/2008-09-26/branches/obil.owl
releases/2008-09-26/merged/
releases/2008-09-26/merged/OBI-nocomment.owl
releases/2008-09-26/merged/SVNlogs.txt
releases/2008-09-26/merged/list-purls.xml
releases/2008-09-26/merged/md5.txt
releases/2008-09-26/merged/protege/
releases/2008-09-26/merged/protege/OBI-ProtegeFriendly.owl
releases/2008-09-26/merged/protege/OBI-ProtegeFriendly.pprj
releases/2008-09-26/merged/qc-queries-report.txt
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From: <mco...@us...> - 2008-09-23 22:21:09
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Revision: 960
http://obi.svn.sourceforge.net/obi/?rev=960&view=rev
Author: mcourtot
Date: 2008-09-23 22:21:06 +0000 (Tue, 23 Sep 2008)
Log Message:
-----------
restored labels for primer role, template role and cloning vector plus insert role
removed extra curation status instance
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <mco...@us...> - 2008-09-23 21:43:05
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Revision: 959
http://obi.svn.sourceforge.net/obi/?rev=959&view=rev
Author: mcourtot
Date: 2008-09-23 21:43:02 +0000 (Tue, 23 Sep 2008)
Log Message:
-----------
files ready for release
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/DataTransformation.owl
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Relations.owl
trunk/src/ontology/branches/Role.owl
trunk/src/ontology/branches/TheRest.owl
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <jen...@us...> - 2008-09-22 19:47:48
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Revision: 958
http://obi.svn.sourceforge.net/obi/?rev=958&view=rev
Author: jenfostel
Date: 2008-09-22 19:47:46 +0000 (Mon, 22 Sep 2008)
Log Message:
-----------
moved terms; starting to re-fix definitions
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <jam...@us...> - 2008-09-22 16:08:43
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Revision: 957
http://obi.svn.sourceforge.net/obi/?rev=957&view=rev
Author: jamesmalone
Date: 2008-09-22 16:08:39 +0000 (Mon, 22 Sep 2008)
Log Message:
-----------
Addition of objectives to biexponential transformation, box-cox transformation all under curve fitting could have this objective.
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <jen...@us...> - 2008-09-22 14:54:50
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Revision: 956
http://obi.svn.sourceforge.net/obi/?rev=956&view=rev
Author: jenfostel
Date: 2008-09-22 14:54:25 +0000 (Mon, 22 Sep 2008)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <jam...@us...> - 2008-09-22 13:51:54
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Revision: 955
http://obi.svn.sourceforge.net/obi/?rev=955&view=rev
Author: jamesmalone
Date: 2008-09-22 13:51:28 +0000 (Mon, 22 Sep 2008)
Log Message:
-----------
Addition of background correction and curve fitting data transformation objectives
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2008-09-18 16:34:57
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Revision: 952
http://obi.svn.sourceforge.net/obi/?rev=952&view=rev
Author: mcourtot
Date: 2008-09-18 23:35:08 +0000 (Thu, 18 Sep 2008)
Log Message:
-----------
obsolete: peptide, cellular compartment, cell component, amino acid (replaced by imports)
environmental matter (formerly known as environmental sample)
rename
"environmental matter" and move rest to editor note.
anatomical entity: This class will be renamed to "organism part" with definition "An
organism part is a part of organism's anatomy or substance arising
from an organism from which the biomaterial was derived, excludes
cells. E.g. tissue, organ, system, sperm, blood or body location
(arm)."
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/Obsolete.owl
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From: <mco...@us...> - 2008-09-18 16:33:05
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Revision: 951
http://obi.svn.sourceforge.net/obi/?rev=951&view=rev
Author: mcourtot
Date: 2008-09-18 23:33:17 +0000 (Thu, 18 Sep 2008)
Log Message:
-----------
removed CARO:0000014
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2008-09-18 16:01:41
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Revision: 949
http://obi.svn.sourceforge.net/obi/?rev=949&view=rev
Author: mcourtot
Date: 2008-09-18 23:01:52 +0000 (Thu, 18 Sep 2008)
Log Message:
-----------
added GO prefix
Modified Paths:
--------------
trunk/src/tools/build/create-external-derived.lisp
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From: <mco...@us...> - 2008-09-16 00:13:03
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Revision: 948
http://obi.svn.sourceforge.net/obi/?rev=948&view=rev
Author: mcourtot
Date: 2008-09-16 00:13:13 +0000 (Tue, 16 Sep 2008)
Log Message:
-----------
moved obi:radioactive from dispositions to obsolete after replacing by pato import icluding in PlanAndPlannedProcess.owl
Modified Paths:
--------------
trunk/src/ontology/branches/Obsolete.owl
trunk/src/ontology/branches/Quality.owl
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From: <mco...@us...> - 2008-09-16 00:10:07
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Revision: 947
http://obi.svn.sourceforge.net/obi/?rev=947&view=rev
Author: mcourtot
Date: 2008-09-16 00:10:17 +0000 (Tue, 16 Sep 2008)
Log Message:
-----------
replaced obi:radioactive by pato:radioactive
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2008-09-16 00:04:17
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Revision: 946
http://obi.svn.sourceforge.net/obi/?rev=946&view=rev
Author: mcourtot
Date: 2008-09-16 00:04:26 +0000 (Tue, 16 Sep 2008)
Log Message:
-----------
moved _PATO_quality, frozen_state, liquid_state, gaseous_state, solid_state from quality to obsolete
Modified Paths:
--------------
trunk/src/ontology/branches/Obsolete.owl
trunk/src/ontology/branches/Quality.owl
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From: <mco...@us...> - 2008-09-15 23:59:14
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Revision: 945
http://obi.svn.sourceforge.net/obi/?rev=945&view=rev
Author: mcourtot
Date: 2008-09-15 23:59:24 +0000 (Mon, 15 Sep 2008)
Log Message:
-----------
added extra info for SO circular and PATO frozen
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2008-09-15 23:55:23
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Revision: 944
http://obi.svn.sourceforge.net/obi/?rev=944&view=rev
Author: mcourtot
Date: 2008-09-15 23:55:35 +0000 (Mon, 15 Sep 2008)
Log Message:
-----------
wrong SO ID - who took the biom notes? ;)
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2008-09-15 23:53:40
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Revision: 943
http://obi.svn.sourceforge.net/obi/?rev=943&view=rev
Author: mcourtot
Date: 2008-09-15 23:53:50 +0000 (Mon, 15 Sep 2008)
Log Message:
-----------
grmmlll duplicate subclass info in externalDerived.owl
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <al...@us...> - 2008-09-14 02:48:00
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Revision: 940
http://obi.svn.sourceforge.net/obi/?rev=940&view=rev
Author: alanr
Date: 2008-09-14 02:48:11 +0000 (Sun, 14 Sep 2008)
Log Message:
-----------
some documentation, a little refactoring, use of uri-aliases
Modified Paths:
--------------
trunk/src/tools/build/add-disjoints.lisp
trunk/src/tools/build/generate-obo.lisp
trunk/src/tools/build/obi.asd
trunk/src/tools/build/qc-queries.lisp
Added Paths:
-----------
trunk/src/tools/build/util.lisp
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From: <al...@us...> - 2008-09-14 01:05:36
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Revision: 939
http://obi.svn.sourceforge.net/obi/?rev=939&view=rev
Author: alanr
Date: 2008-09-14 01:05:47 +0000 (Sun, 14 Sep 2008)
Log Message:
-----------
minor cleanups
Modified Paths:
--------------
trunk/docs/developer/about-branches-directory.txt
trunk/src/tools/build/add-disjoints.lisp
trunk/src/tools/build/obi.asd
trunk/src/tools/build/qc-queries.lisp
Removed Paths:
-------------
web/
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From: <al...@us...> - 2008-09-13 04:58:37
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Revision: 938
http://obi.svn.sourceforge.net/obi/?rev=938&view=rev
Author: alanr
Date: 2008-09-13 04:58:47 +0000 (Sat, 13 Sep 2008)
Log Message:
-----------
disjoints
Modified Paths:
--------------
trunk/src/tools/build/add-disjoints.lisp
trunk/src/tools/build/obi.asd
trunk/src/tools/build/qc-queries.lisp
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From: <al...@us...> - 2008-09-12 10:32:38
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Revision: 937
http://obi.svn.sourceforge.net/obi/?rev=937&view=rev
Author: alanr
Date: 2008-09-12 10:32:48 +0000 (Fri, 12 Sep 2008)
Log Message:
-----------
sync
Modified Paths:
--------------
trunk/src/tools/build/add-disjoints.lisp
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