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From: <al...@us...> - 2008-09-12 07:59:48
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Revision: 936
http://obi.svn.sourceforge.net/obi/?rev=936&view=rev
Author: alanr
Date: 2008-09-12 07:59:59 +0000 (Fri, 12 Sep 2008)
Log Message:
-----------
add env variable ABCL_STACK
Modified Paths:
--------------
trunk/lib/external/lsw/abcl
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From: <al...@us...> - 2008-09-12 07:56:41
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Revision: 935
http://obi.svn.sourceforge.net/obi/?rev=935&view=rev
Author: alanr
Date: 2008-09-12 07:56:52 +0000 (Fri, 12 Sep 2008)
Log Message:
-----------
move to usual place
Added Paths:
-----------
trunk/web/Maintenance.txt
trunk/web/htdocs/
trunk/web/include/
Removed Paths:
-------------
trunk/web/trunk/Maintenance.txt
trunk/web/trunk/htdocs/
trunk/web/trunk/include/
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From: <al...@us...> - 2008-09-12 07:54:51
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Revision: 934
http://obi.svn.sourceforge.net/obi/?rev=934&view=rev
Author: alanr
Date: 2008-09-12 07:55:02 +0000 (Fri, 12 Sep 2008)
Log Message:
-----------
move to usual place
Added Paths:
-----------
trunk/web/
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From: <al...@us...> - 2008-09-11 22:19:15
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Revision: 933
http://obi.svn.sourceforge.net/obi/?rev=933&view=rev
Author: alanr
Date: 2008-09-11 22:19:26 +0000 (Thu, 11 Sep 2008)
Log Message:
-----------
add OBI for purls
Modified Paths:
--------------
trunk/src/tools/build/write-purls.lisp
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From: <mco...@us...> - 2008-09-11 19:32:32
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Revision: 932
http://obi.svn.sourceforge.net/obi/?rev=932&view=rev
Author: mcourtot
Date: 2008-09-11 19:32:42 +0000 (Thu, 11 Sep 2008)
Log Message:
-----------
added DNA: CHEBI:16991 and RNA: CHEBI:33697
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2008-09-11 19:20:33
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Revision: 931
http://obi.svn.sourceforge.net/obi/?rev=931&view=rev
Author: mcourtot
Date: 2008-09-11 19:20:42 +0000 (Thu, 11 Sep 2008)
Log Message:
-----------
removed hierarchy under chebi ontology term - all subclasses are now children of material entity
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2008-09-09 23:17:19
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Revision: 930
http://obi.svn.sourceforge.net/obi/?rev=930&view=rev
Author: mcourtot
Date: 2008-09-09 23:17:28 +0000 (Tue, 09 Sep 2008)
Log Message:
-----------
restored test_synthetic_peptide that was deleted
flattened obsolete hierarchy
repaired obsolete role classes that were having duplicate label because physically in the Role.owl file - these have now been moved here
Modified Paths:
--------------
trunk/src/ontology/branches/Obsolete.owl
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From: <mco...@us...> - 2008-09-09 23:16:01
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Revision: 929
http://obi.svn.sourceforge.net/obi/?rev=929&view=rev
Author: mcourtot
Date: 2008-09-09 23:16:12 +0000 (Tue, 09 Sep 2008)
Log Message:
-----------
moved some obsolete classes (funder, organization_role, label_role and reporter_role) to Obsolete.owl
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <al...@us...> - 2008-09-09 08:18:57
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Revision: 928
http://obi.svn.sourceforge.net/obi/?rev=928&view=rev
Author: alanr
Date: 2008-09-09 08:19:07 +0000 (Tue, 09 Sep 2008)
Log Message:
-----------
If we see something used as annotation property, don't note it as a datatype or object property later.
We will compensate for Pellet's (or someone's) carelessness in bothering us about
WARN [Thread-4] (OWLLoader.java:364) - Unsupported axiom: Property http://purl.org/dc/elements/1.1/creator is defined both as an AnnotationProperty and a DatatypeProperty
Modified Paths:
--------------
trunk/src/tools/build/uri-report.lisp
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From: <al...@us...> - 2008-09-09 06:47:01
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Revision: 927
http://obi.svn.sourceforge.net/obi/?rev=927&view=rev
Author: alanr
Date: 2008-09-09 06:47:09 +0000 (Tue, 09 Sep 2008)
Log Message:
-----------
removed debugging code
Modified Paths:
--------------
trunk/src/tools/build/write-purls.lisp
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From: <al...@us...> - 2008-09-09 06:46:32
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Revision: 926
http://obi.svn.sourceforge.net/obi/?rev=926&view=rev
Author: alanr
Date: 2008-09-09 06:46:42 +0000 (Tue, 09 Sep 2008)
Log Message:
-----------
don't add individuals for obsoletes
Modified Paths:
--------------
trunk/src/tools/build/add-assumed-individuals.lisp
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From: <al...@us...> - 2008-09-09 06:45:38
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Revision: 925
http://obi.svn.sourceforge.net/obi/?rev=925&view=rev
Author: alanr
Date: 2008-09-09 06:45:48 +0000 (Tue, 09 Sep 2008)
Log Message:
-----------
bugfix don't do disjoints with defined classes
Modified Paths:
--------------
trunk/src/tools/build/add-disjoints.lisp
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From: <al...@us...> - 2008-09-09 06:20:20
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Revision: 924
http://obi.svn.sourceforge.net/obi/?rev=924&view=rev
Author: alanr
Date: 2008-09-09 06:20:30 +0000 (Tue, 09 Sep 2008)
Log Message:
-----------
See email to obi-biomaterial, obi-relations, obi-instrument-and-part
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/Relations.owl
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From: <al...@us...> - 2008-09-09 05:42:14
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Revision: 923
http://obi.svn.sourceforge.net/obi/?rev=923&view=rev
Author: alanr
Date: 2008-09-09 05:42:24 +0000 (Tue, 09 Sep 2008)
Log Message:
-----------
Add annotation property declarations where they shouldn't be necessary :(
Modified Paths:
--------------
trunk/src/ontology/branches/OBI-Function.owl
trunk/src/ontology/branches/Relations.owl
trunk/src/ontology/branches/Role.owl
trunk/src/ontology/branches/TheRest.owl
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/obil.owl
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From: <mco...@us...> - 2008-09-04 23:45:33
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Revision: 922
http://obi.svn.sourceforge.net/obi/?rev=922&view=rev
Author: mcourtot
Date: 2008-09-04 23:45:43 +0000 (Thu, 04 Sep 2008)
Log Message:
-----------
removed extra import declaration
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <mco...@us...> - 2008-09-04 23:45:15
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Revision: 921
http://obi.svn.sourceforge.net/obi/?rev=921&view=rev
Author: mcourtot
Date: 2008-09-04 23:45:25 +0000 (Thu, 04 Sep 2008)
Log Message:
-----------
removed extra import declaration
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <jgr...@us...> - 2008-09-04 23:31:06
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Revision: 920
http://obi.svn.sourceforge.net/obi/?rev=920&view=rev
Author: jgreenbaum
Date: 2008-09-04 23:31:17 +0000 (Thu, 04 Sep 2008)
Log Message:
-----------
Corrected inconsistency in NMR
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <jgr...@us...> - 2008-09-04 16:59:30
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Revision: 919
http://obi.svn.sourceforge.net/obi/?rev=919&view=rev
Author: jgreenbaum
Date: 2008-09-04 16:59:41 +0000 (Thu, 04 Sep 2008)
Log Message:
-----------
PA call 9/4/08
Went through assays and added restrictions to make them classify under assay
imaging assay
mass spectrometry assay
nuclear magnetic resonance assay - device restriction is iffy
PCR-SSCP assay
radioactivity detection
sequencing
structure assay
tumor grading
problematic terms:
detection of label
measuring
weight assessment - definition includes the concept of time
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <bjo...@us...> - 2008-08-29 17:31:44
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Revision: 918
http://obi.svn.sourceforge.net/obi/?rev=918&view=rev
Author: bjoernpeters
Date: 2008-08-29 17:31:54 +0000 (Fri, 29 Aug 2008)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
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From: <bjo...@us...> - 2008-08-27 16:10:10
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Revision: 917
http://obi.svn.sourceforge.net/obi/?rev=917&view=rev
Author: bjoernpeters
Date: 2008-08-27 16:10:18 +0000 (Wed, 27 Aug 2008)
Log Message:
-----------
Use case call, added cloning insert and vector roles. Updated logical definition of plasmid cloning
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
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From: <mco...@us...> - 2008-08-25 21:23:45
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Revision: 916
http://obi.svn.sourceforge.net/obi/?rev=916&view=rev
Author: mcourtot
Date: 2008-08-25 21:23:51 +0000 (Mon, 25 Aug 2008)
Log Message:
-----------
corrected error message when unvalid parent
Modified Paths:
--------------
trunk/src/tools/add-to-external.pl
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From: <mco...@us...> - 2008-08-25 18:08:24
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Revision: 915
http://obi.svn.sourceforge.net/obi/?rev=915&view=rev
Author: mcourtot
Date: 2008-08-25 18:08:30 +0000 (Mon, 25 Aug 2008)
Log Message:
-----------
removed extra import of Relations.owl
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2008-08-25 00:46:53
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Revision: 914
http://obi.svn.sourceforge.net/obi/?rev=914&view=rev
Author: alanr
Date: 2008-08-25 00:47:01 +0000 (Mon, 25 Aug 2008)
Log Message:
-----------
s/asd:/asdf:/
Modified Paths:
--------------
trunk/bin/obi-lisp-eval.pl
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From: <bjo...@us...> - 2008-08-22 17:10:03
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Revision: 913
http://obi.svn.sourceforge.net/obi/?rev=913&view=rev
Author: bjoernpeters
Date: 2008-08-22 17:10:12 +0000 (Fri, 22 Aug 2008)
Log Message:
-----------
Use case call.
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2008-08-22 03:27:41
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Revision: 912
http://obi.svn.sourceforge.net/obi/?rev=912&view=rev
Author: alanr
Date: 2008-08-22 03:27:50 +0000 (Fri, 22 Aug 2008)
Log Message:
-----------
update to use lsw-eval script
Modified Paths:
--------------
trunk/docs/developer/about-branches-directory.txt
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