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From: <mco...@us...> - 2008-10-01 23:19:34
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Revision: 991
http://obi.svn.sourceforge.net/obi/?rev=991&view=rev
Author: mcourtot
Date: 2008-10-01 23:19:32 +0000 (Wed, 01 Oct 2008)
Log Message:
-----------
added protege default language to alow label display
Modified Paths:
--------------
trunk/src/examples/development/OBIIrradiated/OBIIrradiated.owl
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From: <mco...@us...> - 2008-10-01 22:18:22
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Revision: 990
http://obi.svn.sourceforge.net/obi/?rev=990&view=rev
Author: mcourtot
Date: 2008-10-01 22:18:15 +0000 (Wed, 01 Oct 2008)
Log Message:
-----------
minor corrections - preparing for resubmission
1. Changes:
For the OWLED paper, please put into the acknowledgements all the following grants (not just the NuGO, as previously indicated by me):
the BBSRC (BB/D524283/1, BB/E025080/1), the EU Network of Excellence NuGO (NoE 503630), the EU Carcinogenomics (PL037712)
2. Typos:
- page 4
Other options are possible, for instance having the
script that generates additional information or using software that extracts a module of
the external ontology.
- page 5
The reports are rated according what action needs to be taken: simple warnings for
those errors that can be corrected automatically by script
- page 6
footnote is duplicated
The latest version of OBI is available at http://purl.obofoundry.org/obo/obi.owl
- page 9
An ontology interface that supported fluidly moving between
the component trees, the defined classes, an
- page 9
Our solution for disjoints is not entirely satisfactory. Declaring disjoint policy for
whole trees where the siblings are all mutually disjoint is appealing, but there are
exceptions., Co
Modified Paths:
--------------
trunk/docs/papers/owled2008/owled2008eu_submission_38.doc
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From: <jam...@us...> - 2008-10-01 10:51:32
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Revision: 989
http://obi.svn.sourceforge.net/obi/?rev=989&view=rev
Author: jamesmalone
Date: 2008-10-01 10:51:27 +0000 (Wed, 01 Oct 2008)
Log Message:
-----------
Fist commit of spreadsheet from MC of some DT objectives identified
Added Paths:
-----------
trunk/docs/developer/DT/DT_Objectives_MC.xls
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From: <mco...@us...> - 2008-09-30 22:44:05
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Revision: 988
http://obi.svn.sourceforge.net/obi/?rev=988&view=rev
Author: mcourtot
Date: 2008-09-30 22:43:52 +0000 (Tue, 30 Sep 2008)
Log Message:
-----------
removed dodgy axiom
Modified Paths:
--------------
trunk/src/examples/development/OBIIrradiated/OBIIrradiated.owl
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From: <mco...@us...> - 2008-09-30 22:10:53
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Revision: 987
http://obi.svn.sourceforge.net/obi/?rev=987&view=rev
Author: mcourtot
Date: 2008-09-30 22:10:42 +0000 (Tue, 30 Sep 2008)
Log Message:
-----------
attempt at modeling irradiation, using mini OBI with only required classes
Added Paths:
-----------
trunk/src/examples/development/OBIIrradiated/
trunk/src/examples/development/OBIIrradiated/OBIIrradiated.owl
trunk/src/examples/development/OBIIrradiated/OBIIrradiated.pprj
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From: <jen...@us...> - 2008-09-29 18:44:57
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Revision: 986
http://obi.svn.sourceforge.net/obi/?rev=986&view=rev
Author: jenfostel
Date: 2008-09-29 18:44:47 +0000 (Mon, 29 Sep 2008)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <mco...@us...> - 2008-09-27 04:30:37
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Revision: 985
http://obi.svn.sourceforge.net/obi/?rev=985&view=rev
Author: mcourtot
Date: 2008-09-27 04:30:28 +0000 (Sat, 27 Sep 2008)
Log Message:
-----------
updated enzyme to include protein complex after GO import
deleted defined class DNA polymerase, now replaced by GO import of DNA polymerase, to which the restriction regarding function has been added
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <mco...@us...> - 2008-09-27 04:14:37
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Revision: 984
http://obi.svn.sourceforge.net/obi/?rev=984&view=rev
Author: mcourtot
Date: 2008-09-27 04:14:32 +0000 (Sat, 27 Sep 2008)
Log Message:
-----------
PCR product is now double stranded DNA instead of just material entity
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <mco...@us...> - 2008-09-27 04:09:56
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Revision: 983
http://obi.svn.sourceforge.net/obi/?rev=983&view=rev
Author: mcourtot
Date: 2008-09-27 04:09:46 +0000 (Sat, 27 Sep 2008)
Log Message:
-----------
added protein complex and DNA polymerase complex (mireot-ed from GO)
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2008-09-26 22:22:59
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Revision: 982
http://obi.svn.sourceforge.net/obi/?rev=982&view=rev
Author: mcourtot
Date: 2008-09-26 22:22:48 +0000 (Fri, 26 Sep 2008)
Log Message:
-----------
removed assumed-individuals from merge
Modified Paths:
--------------
trunk/src/tools/build/OBITools/OBITools.jar
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/OBIMerger.java
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From: <mco...@us...> - 2008-09-26 20:12:02
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Revision: 981
http://obi.svn.sourceforge.net/obi/?rev=981&view=rev
Author: mcourtot
Date: 2008-09-26 20:11:58 +0000 (Fri, 26 Sep 2008)
Log Message:
-----------
corrected xml base and ontology uri declaration
Modified Paths:
--------------
trunk/src/tools/build/OBITools/OBITools.jar
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/OBIMerger.java
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From: <mco...@us...> - 2008-09-26 19:17:37
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Revision: 980
http://obi.svn.sourceforge.net/obi/?rev=980&view=rev
Author: mcourtot
Date: 2008-09-26 19:17:32 +0000 (Fri, 26 Sep 2008)
Log Message:
-----------
corrected xml base
Modified Paths:
--------------
releases/2008-09-26/merged/OBI-nocomment.owl
releases/2008-09-26/merged/protege/OBI-ProtegeFriendly.owl
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From: <mco...@us...> - 2008-09-26 19:17:17
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Revision: 979
http://obi.svn.sourceforge.net/obi/?rev=979&view=rev
Author: mcourtot
Date: 2008-09-26 19:17:02 +0000 (Fri, 26 Sep 2008)
Log Message:
-----------
corrected xml base
Modified Paths:
--------------
releases/2008-09-26/merged/OBI.owl
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From: <mco...@us...> - 2008-09-26 03:54:21
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Revision: 978
http://obi.svn.sourceforge.net/obi/?rev=978&view=rev
Author: mcourtot
Date: 2008-09-26 03:54:11 +0000 (Fri, 26 Sep 2008)
Log Message:
-----------
ooppps :) plasmid is circular
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <mco...@us...> - 2008-09-26 03:46:25
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Revision: 977
http://obi.svn.sourceforge.net/obi/?rev=977&view=rev
Author: mcourtot
Date: 2008-09-26 03:46:15 +0000 (Fri, 26 Sep 2008)
Log Message:
-----------
removed **** imports added by Protege
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <mco...@us...> - 2008-09-26 03:39:26
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Revision: 976
http://obi.svn.sourceforge.net/obi/?rev=976&view=rev
Author: mcourtot
Date: 2008-09-26 03:39:16 +0000 (Fri, 26 Sep 2008)
Log Message:
-----------
created defined classes for plasmid, enzyme, DNA polymerase, reverse transcriptase
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <mco...@us...> - 2008-09-25 23:00:08
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Revision: 975
http://obi.svn.sourceforge.net/obi/?rev=975&view=rev
Author: mcourtot
Date: 2008-09-25 22:59:56 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
additions from alan
Modified Paths:
--------------
trunk/docs/user/release_notes.html
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From: <mco...@us...> - 2008-09-25 22:44:14
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Revision: 974
http://obi.svn.sourceforge.net/obi/?rev=974&view=rev
Author: mcourtot
Date: 2008-09-25 22:44:08 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
new release - 20080926
Modified Paths:
--------------
trunk/docs/user/release_notes.html
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From: <al...@us...> - 2008-09-25 22:30:16
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Revision: 973
http://obi.svn.sourceforge.net/obi/?rev=973&view=rev
Author: alanr
Date: 2008-09-25 22:30:04 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
minor
Modified Paths:
--------------
trunk/src/tools/build/util.lisp
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From: <al...@us...> - 2008-09-25 22:27:06
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Revision: 972
http://obi.svn.sourceforge.net/obi/?rev=972&view=rev
Author: alanr
Date: 2008-09-25 22:26:56 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
obi with comments
Modified Paths:
--------------
releases/2008-09-26/merged/OBI.owl
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From: <mco...@us...> - 2008-09-25 22:25:20
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Revision: 971
http://obi.svn.sourceforge.net/obi/?rev=971&view=rev
Author: mcourtot
Date: 2008-09-25 22:25:15 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
the "early" release ;)
Added Paths:
-----------
releases/2008-09-26/merged/OBI.owl
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From: <al...@us...> - 2008-09-25 22:18:51
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Revision: 970
http://obi.svn.sourceforge.net/obi/?rev=970&view=rev
Author: alanr
Date: 2008-09-25 22:18:39 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
merged from melanie on ashby
Modified Paths:
--------------
releases/2008-09-26/merged/OBI-nocomment.owl
releases/2008-09-26/merged/SVNlogs.txt
releases/2008-09-26/merged/list-purls.xml
releases/2008-09-26/merged/protege/OBI-ProtegeFriendly.owl
Added Paths:
-----------
releases/2008-09-26/merged/qc-queries-report1.txt
releases/2008-09-26/merged/qc-queries-report2.txt
releases/2008-09-26/merged/qc-queries-report3.txt
releases/2008-09-26/merged/qc-queries-report4.txt
releases/2008-09-26/merged/qc-queries-report5.txt
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From: <al...@us...> - 2008-09-25 22:04:38
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Revision: 969
http://obi.svn.sourceforge.net/obi/?rev=969&view=rev
Author: alanr
Date: 2008-09-25 22:04:32 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
release
Modified Paths:
--------------
releases/2008-09-26/build/util.lisp
Added Paths:
-----------
releases/2008-09-26/branches/
releases/2008-09-26/build/
releases/2008-09-26/external/
Removed Paths:
-------------
releases/2008-09-26/branches.prev/
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From: <al...@us...> - 2008-09-25 22:02:44
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Revision: 968
http://obi.svn.sourceforge.net/obi/?rev=968&view=rev
Author: alanr
Date: 2008-09-25 22:02:33 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
move branches out of way
Added Paths:
-----------
releases/2008-09-26/branches.prev/
Removed Paths:
-------------
releases/2008-09-26/branches/
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From: <mco...@us...> - 2008-09-25 19:11:00
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Revision: 967
http://obi.svn.sourceforge.net/obi/?rev=967&view=rev
Author: mcourtot
Date: 2008-09-25 19:10:50 +0000 (Thu, 25 Sep 2008)
Log Message:
-----------
removed chebi ontology - files ready for release
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
trunk/src/ontology/branches/TheRest.owl
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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