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From: <al...@us...> - 2008-07-18 20:49:27
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Revision: 861
http://obi.svn.sourceforge.net/obi/?rev=861&view=rev
Author: alanr
Date: 2008-07-18 20:49:35 +0000 (Fri, 18 Jul 2008)
Log Message:
-----------
add superclasses based on including assumed individuals
Modified Paths:
--------------
trunk/src/tools/build/add-inferred-superclasses.lisp
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From: <al...@us...> - 2008-07-18 20:48:06
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Revision: 860
http://obi.svn.sourceforge.net/obi/?rev=860&view=rev
Author: alanr
Date: 2008-07-18 20:48:14 +0000 (Fri, 18 Jul 2008)
Log Message:
-----------
removed consistency check as it was triggering some nastyness in the server.
Order:
1) Compute disjoints
2) Compute assumed individuals
3) Compute inferred classes (including individuals and disjoints)
The consistency check is done in step 3
Modified Paths:
--------------
trunk/src/tools/build/add-assumed-individuals.lisp
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From: <al...@us...> - 2008-07-18 20:44:46
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Revision: 859
http://obi.svn.sourceforge.net/obi/?rev=859&view=rev
Author: alanr
Date: 2008-07-18 20:44:55 +0000 (Fri, 18 Jul 2008)
Log Message:
-----------
obi+disjoints+assumed-individuals
Added Paths:
-----------
trunk/src/ontology/branches/obidi.owl
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From: <al...@us...> - 2008-07-18 06:52:02
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Revision: 858
http://obi.svn.sourceforge.net/obi/?rev=858&view=rev
Author: alanr
Date: 2008-07-18 06:52:10 +0000 (Fri, 18 Jul 2008)
Log Message:
-----------
bugfix
Modified Paths:
--------------
trunk/src/tools/add-to-external.pl
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From: <al...@us...> - 2008-07-18 06:51:37
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Revision: 857
http://obi.svn.sourceforge.net/obi/?rev=857&view=rev
Author: alanr
Date: 2008-07-18 06:51:43 +0000 (Fri, 18 Jul 2008)
Log Message:
-----------
check if kb consistent first
Modified Paths:
--------------
trunk/src/tools/build/add-inferred-superclasses.lisp
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From: <al...@us...> - 2008-07-18 06:50:37
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Revision: 856
http://obi.svn.sourceforge.net/obi/?rev=856&view=rev
Author: alanr
Date: 2008-07-18 06:50:46 +0000 (Fri, 18 Jul 2008)
Log Message:
-----------
external-derived
Modified Paths:
--------------
trunk/src/tools/build/obi.asd
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From: <mco...@us...> - 2008-07-18 04:07:39
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Revision: 855
http://obi.svn.sourceforge.net/obi/?rev=855&view=rev
Author: mcourtot
Date: 2008-07-18 04:07:47 +0000 (Fri, 18 Jul 2008)
Log Message:
-----------
removed extra label "ready for release" assigned to metadata incomplete curation status instance
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
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From: <mco...@us...> - 2008-07-18 03:53:19
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Revision: 854
http://obi.svn.sourceforge.net/obi/?rev=854&view=rev
Author: mcourtot
Date: 2008-07-18 03:53:25 +0000 (Fri, 18 Jul 2008)
Log Message:
-----------
removed extra curation status instance
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/OBI-Function.owl
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From: <al...@us...> - 2008-07-18 03:36:30
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Revision: 853
http://obi.svn.sourceforge.net/obi/?rev=853&view=rev
Author: alanr
Date: 2008-07-18 03:36:38 +0000 (Fri, 18 Jul 2008)
Log Message:
-----------
remove imports again. I hate protege.
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
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From: <mco...@us...> - 2008-07-17 18:53:38
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Revision: 852
http://obi.svn.sourceforge.net/obi/?rev=852&view=rev
Author: mcourtot
Date: 2008-07-17 18:53:43 +0000 (Thu, 17 Jul 2008)
Log Message:
-----------
added assumed-individuals
Modified Paths:
--------------
trunk/src/tools/build/obi.asd
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From: <mco...@us...> - 2008-07-17 18:51:33
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Revision: 851
http://obi.svn.sourceforge.net/obi/?rev=851&view=rev
Author: mcourtot
Date: 2008-07-17 18:51:33 +0000 (Thu, 17 Jul 2008)
Log Message:
-----------
added PRO and CARO prefixes
added assumed individuals
Modified Paths:
--------------
trunk/src/tools/build/OBITools/OBITools.jar
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/OBIMerger.java
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From: <jgr...@us...> - 2008-07-17 17:13:48
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Revision: 850
http://obi.svn.sourceforge.net/obi/?rev=850&view=rev
Author: jgreenbaum
Date: 2008-07-17 17:13:43 +0000 (Thu, 17 Jul 2008)
Log Message:
-----------
removed OSX xl2owl binary
Removed Paths:
-------------
trunk/bin/osx/xl2owl
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From: <fgi...@us...> - 2008-07-16 11:05:26
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Revision: 848
http://obi.svn.sourceforge.net/obi/?rev=848&view=rev
Author: fgibson_sf
Date: 2008-07-16 04:05:35 -0700 (Wed, 16 Jul 2008)
Log Message:
-----------
Added functions to all devices added devices from sepCV
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/OBI-Function.owl
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From: <fgi...@us...> - 2008-07-15 16:32:05
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Revision: 847
http://obi.svn.sourceforge.net/obi/?rev=847&view=rev
Author: fgibson_sf
Date: 2008-07-15 09:32:10 -0700 (Tue, 15 Jul 2008)
Log Message:
-----------
-Magically turned the instrument class into a defined class initially based on any device that and a measure or synthesise function
-Added the restriction on artifact_object and device that they are the output of some material transformation process
-artifact_onject, device and instrument and infer correctly
-omtology is consistent
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
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From: <fgi...@us...> - 2008-07-15 14:48:49
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Revision: 846
http://obi.svn.sourceforge.net/obi/?rev=846&view=rev
Author: fgibson_sf
Date: 2008-07-15 07:47:57 -0700 (Tue, 15 Jul 2008)
Log Message:
-----------
Added function to function branch from http://spreadsheets.google.com/ccc?key=pT8ShyqlllIVSL43Cm6zRBQ&hl=en_GB
Modified Paths:
--------------
trunk/src/ontology/branches/OBI-Function.owl
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From: <al...@us...> - 2008-07-15 11:45:13
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Revision: 845
http://obi.svn.sourceforge.net/obi/?rev=845&view=rev
Author: alanr
Date: 2008-07-15 04:45:10 -0700 (Tue, 15 Jul 2008)
Log Message:
-----------
generate assumed individuals as discussed in http://groups.google.com/group/obi-owl/msg/e64b981a835405eb
Added Paths:
-----------
trunk/src/tools/build/add-assumed-individuals.lisp
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From: <al...@us...> - 2008-07-15 09:58:47
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Revision: 844
http://obi.svn.sourceforge.net/obi/?rev=844&view=rev
Author: alanr
Date: 2008-07-15 02:58:56 -0700 (Tue, 15 Jul 2008)
Log Message:
-----------
base
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
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From: <al...@us...> - 2008-07-15 09:45:58
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Revision: 843
http://obi.svn.sourceforge.net/obi/?rev=843&view=rev
Author: alanr
Date: 2008-07-15 02:46:04 -0700 (Tue, 15 Jul 2008)
Log Message:
-----------
fix problem with xml:base
Modified Paths:
--------------
trunk/src/tools/build/create-external-derived.lisp
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From: <al...@us...> - 2008-07-15 09:41:11
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Revision: 842
http://obi.svn.sourceforge.net/obi/?rev=842&view=rev
Author: alanr
Date: 2008-07-15 02:41:09 -0700 (Tue, 15 Jul 2008)
Log Message:
-----------
xml:base/ontology name lossage
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
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From: <al...@us...> - 2008-07-14 22:38:39
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Revision: 841
http://obi.svn.sourceforge.net/obi/?rev=841&view=rev
Author: alanr
Date: 2008-07-14 15:38:49 -0700 (Mon, 14 Jul 2008)
Log Message:
-----------
clean out warnings
Modified Paths:
--------------
trunk/src/tools/build/create-external-derived.lisp
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From: <dan...@us...> - 2008-07-14 15:54:40
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Revision: 840
http://obi.svn.sourceforge.net/obi/?rev=840&view=rev
Author: daniel_schober
Date: 2008-07-14 08:54:49 -0700 (Mon, 14 Jul 2008)
Log Message:
-----------
delete ds exp
Removed Paths:
-------------
branches/dsbranch/
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From: <dan...@us...> - 2008-07-14 15:39:06
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Revision: 839
http://obi.svn.sourceforge.net/obi/?rev=839&view=rev
Author: daniel_schober
Date: 2008-07-14 08:39:13 -0700 (Mon, 14 Jul 2008)
Log Message:
-----------
made a copy
Added Paths:
-----------
branches/dsbranch/
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From: <jam...@us...> - 2008-07-14 11:24:32
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Revision: 838
http://obi.svn.sourceforge.net/obi/?rev=838&view=rev
Author: jamesmalone
Date: 2008-07-14 04:24:33 -0700 (Mon, 14 Jul 2008)
Log Message:
-----------
changed formatting for printing 2 on a page. removed evil face from it.
Modified Paths:
--------------
trunk/docs/developer/posters/OBI_ISMB_Handout.doc
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From: <al...@us...> - 2008-07-14 05:11:09
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Revision: 837
http://obi.svn.sourceforge.net/obi/?rev=837&view=rev
Author: alanr
Date: 2008-07-13 22:11:20 -0700 (Sun, 13 Jul 2008)
Log Message:
-----------
write to branches directory by default.
Modified Paths:
--------------
trunk/src/tools/build/create-external-derived.lisp
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From: <al...@us...> - 2008-07-14 05:10:47
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Revision: 836
http://obi.svn.sourceforge.net/obi/?rev=836&view=rev
Author: alanr
Date: 2008-07-13 22:10:56 -0700 (Sun, 13 Jul 2008)
Log Message:
-----------
one last for the night
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
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