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From: <dan...@us...> - 2008-11-13 18:06:27
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Revision: 1163
http://obi.svn.sourceforge.net/obi/?rev=1163&view=rev
Author: daniel_schober
Date: 2008-11-13 18:06:23 +0000 (Thu, 13 Nov 2008)
Log Message:
-----------
changed curation_status manually for class
<owl:Class rdf:about="http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400015">
<OBI_0000279 xml:lang="en">GROUP:<http://msi-ontology.sourceforge.net></OBI_0000279>
<OBI_0000291 xml:lang="en">A component of an NMR instrument that controls the activities of the other components.</OBI_0000291>
<rdfs:subClassOf rdf:resource="http://purl.obofoundry.org/obo/OBI_0400002"/>
<OBI_0000281 rdf:resource="http://purl.obofoundry.org/obo/OBI_0000323"/>
<OBI_0000275 xml:lang="en">msi_400015</OBI_0000275>
<OBI_0000275 xml:lang="en">NMR instrument, TODO: same as or part of acquisition computer?</OBI_0000275>
<OBI_0000274 xml:lang="en">PERSON:Daniel Schober</OBI_0000274>
<OBI_0000288 xml:lang="en">NMR console</OBI_0000288>
<rdfs:label xml:lang="en">NMR console</rdfs:label>
</owl:Class>
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
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From: <bjo...@us...> - 2008-11-13 18:01:15
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Revision: 1162
http://obi.svn.sourceforge.net/obi/?rev=1162&view=rev
Author: bjoernpeters
Date: 2008-11-13 18:01:10 +0000 (Thu, 13 Nov 2008)
Log Message:
-----------
Protocol App call; additions of examples and annotation to assay and analyte measuring assay
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <dan...@us...> - 2008-11-13 17:00:15
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Revision: 1161
http://obi.svn.sourceforge.net/obi/?rev=1161&view=rev
Author: daniel_schober
Date: 2008-11-13 17:00:12 +0000 (Thu, 13 Nov 2008)
Log Message:
-----------
added an example txt file from MSI, and updated readme file correspondingly
Modified Paths:
--------------
trunk/src/tools/format-converters/xl2owl/README
Added Paths:
-----------
trunk/src/tools/format-converters/xl2owl/MSI_Instruments_template.txt
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From: <jam...@us...> - 2008-11-13 12:03:59
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Revision: 1160
http://obi.svn.sourceforge.net/obi/?rev=1160&view=rev
Author: jamesmalone
Date: 2008-11-13 12:03:56 +0000 (Thu, 13 Nov 2008)
Log Message:
-----------
fix to imports statement that stupid protege KEEPS ON ADDING CRAP TO in my owl files for no apparent reason.
Modified Paths:
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trunk/src/ontology/branches/Obsolete.owl
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From: <jam...@us...> - 2008-11-13 11:10:08
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Revision: 1159
http://obi.svn.sourceforge.net/obi/?rev=1159&view=rev
Author: jamesmalone
Date: 2008-11-13 11:10:06 +0000 (Thu, 13 Nov 2008)
Log Message:
-----------
added obsolete classes:
background correction
random vector reduction
property-based vector selection
Modified Paths:
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trunk/src/ontology/branches/Obsolete.owl
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From: <mco...@us...> - 2008-11-13 01:12:33
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Revision: 1158
http://obi.svn.sourceforge.net/obi/?rev=1158&view=rev
Author: mcourtot
Date: 2008-11-13 01:12:28 +0000 (Thu, 13 Nov 2008)
Log Message:
-----------
removed leftover annotation for merging objective (OBI_0200180_2)
Modified Paths:
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trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2008-11-13 00:36:46
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Revision: 1157
http://obi.svn.sourceforge.net/obi/?rev=1157&view=rev
Author: alanr
Date: 2008-11-13 00:36:40 +0000 (Thu, 13 Nov 2008)
Log Message:
-----------
annotation property name mistake
Modified Paths:
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trunk/src/ontology/branches/external-byhand.owl
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From: <al...@us...> - 2008-11-13 00:29:16
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Revision: 1156
http://obi.svn.sourceforge.net/obi/?rev=1156&view=rev
Author: alanr
Date: 2008-11-13 00:29:07 +0000 (Thu, 13 Nov 2008)
Log Message:
-----------
CHEBI:17234 versus CHEBI_17234
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2008-11-13 00:27:10
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Revision: 1155
http://obi.svn.sourceforge.net/obi/?rev=1155&view=rev
Author: alanr
Date: 2008-11-13 00:27:03 +0000 (Thu, 13 Nov 2008)
Log Message:
-----------
CHEBI:17234 versus CHEBI_17234
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
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From: <al...@us...> - 2008-11-13 00:26:53
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Revision: 1154
http://obi.svn.sourceforge.net/obi/?rev=1154&view=rev
Author: alanr
Date: 2008-11-13 00:26:48 +0000 (Thu, 13 Nov 2008)
Log Message:
-----------
CHEBI:17234 vs CHEBI_17234
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2008-11-13 00:07:06
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Revision: 1153
http://obi.svn.sourceforge.net/obi/?rev=1153&view=rev
Author: mcourtot
Date: 2008-11-13 00:07:04 +0000 (Thu, 13 Nov 2008)
Log Message:
-----------
removed declaration of rol_is_borne_by
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2008-11-12 23:59:49
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Revision: 1152
http://obi.svn.sourceforge.net/obi/?rev=1152&view=rev
Author: mcourtot
Date: 2008-11-12 23:59:44 +0000 (Wed, 12 Nov 2008)
Log Message:
-----------
removed IAO branch annotation from PlanAndPlannedProcess.owl file to DENRIE file (annotation was of NRIE)
removed has_role declaration from PAPP.owl file added to Relations.owl file
Modified Paths:
--------------
trunk/src/ontology/branches/DigitalEntityPlus.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Relations.owl
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From: <mco...@us...> - 2008-11-12 20:58:41
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Revision: 1151
http://obi.svn.sourceforge.net/obi/?rev=1151&view=rev
Author: mcourtot
Date: 2008-11-12 20:58:32 +0000 (Wed, 12 Nov 2008)
Log Message:
-----------
moved definition of analyte_role to Role.owl file
analyte_role renamed analyte role
Modified Paths:
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trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
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From: <mco...@us...> - 2008-11-12 20:04:02
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Revision: 1150
http://obi.svn.sourceforge.net/obi/?rev=1150&view=rev
Author: mcourtot
Date: 2008-11-12 20:04:00 +0000 (Wed, 12 Nov 2008)
Log Message:
-----------
deleted evaluant_role created by PA branch, as evaluant already existed in Role.owl file
updated definition of evaluant in Role.owl file, renamed evaluant role instead of evaluant
updated restrictions in PlanAnPlannedProcess.owl file to use evaluant role (OBI_0000067) instead of now deleted evaluant_role (Class_5)
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
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From: <mco...@us...> - 2008-11-12 19:57:13
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Revision: 1149
http://obi.svn.sourceforge.net/obi/?rev=1149&view=rev
Author: mcourtot
Date: 2008-11-12 19:57:12 +0000 (Wed, 12 Nov 2008)
Log Message:
-----------
moved administered material role from Plan to Role file
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
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From: <mco...@us...> - 2008-11-12 19:53:21
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Revision: 1148
http://obi.svn.sourceforge.net/obi/?rev=1148&view=rev
Author: mcourtot
Date: 2008-11-12 19:52:49 +0000 (Wed, 12 Nov 2008)
Log Message:
-----------
moved target role from plan to role
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
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From: <mco...@us...> - 2008-11-12 18:47:03
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Revision: 1147
http://obi.svn.sourceforge.net/obi/?rev=1147&view=rev
Author: mcourtot
Date: 2008-11-12 18:46:57 +0000 (Wed, 12 Nov 2008)
Log Message:
-----------
removed extra instances of curation status
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2008-11-12 16:59:49
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Revision: 1146
http://obi.svn.sourceforge.net/obi/?rev=1146&view=rev
Author: alanr
Date: 2008-11-12 16:59:44 +0000 (Wed, 12 Nov 2008)
Log Message:
-----------
first draft. Generated by (generate-obo)
Added Paths:
-----------
trunk/src/ontology/branches/obi.obo
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From: <bjo...@us...> - 2008-11-12 07:47:35
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Revision: 1145
http://obi.svn.sourceforge.net/obi/?rev=1145&view=rev
Author: bjoernpeters
Date: 2008-11-12 07:47:31 +0000 (Wed, 12 Nov 2008)
Log Message:
-----------
re-surrection of the analyte role definition from commit 1118
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
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From: <dan...@us...> - 2008-11-11 17:51:11
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Revision: 1144
http://obi.svn.sourceforge.net/obi/?rev=1144&view=rev
Author: daniel_schober
Date: 2008-11-11 17:51:06 +0000 (Tue, 11 Nov 2008)
Log Message:
-----------
Cleaned up the device branch: Moved MSI instruments from under 'instrument' to 'device' (loosing structure, but complying with the inconsistently applies (and in my eyes) non-sensical) OBI policy that says 'never assert under a defined class'...
Further a few classes were re-binned, curation status instances added, orthography of 'artifact_object' refined, ...
Modified Paths:
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trunk/src/ontology/branches/InstrumentAndPart.owl
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From: <mco...@us...> - 2008-11-11 15:14:48
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Revision: 1143
http://obi.svn.sourceforge.net/obi/?rev=1143&view=rev
Author: mcourtot
Date: 2008-11-11 15:14:36 +0000 (Tue, 11 Nov 2008)
Log Message:
-----------
corrected my own mistake with label of quality_borne_by (sorry JM and AR :( )
Modified Paths:
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trunk/src/ontology/branches/Quality.owl
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From: <jam...@us...> - 2008-11-11 10:06:54
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Revision: 1142
http://obi.svn.sourceforge.net/obi/?rev=1142&view=rev
Author: jamesmalone
Date: 2008-11-11 10:06:51 +0000 (Tue, 11 Nov 2008)
Log Message:
-----------
Adding back edits from version 1118 which were lost:
assay definition and axiom
evaluant_role definition
analyte measuring assay definition and editor note
analyte measuring objective definition
Modified Paths:
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trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2008-11-10 22:10:19
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Revision: 1141
http://obi.svn.sourceforge.net/obi/?rev=1141&view=rev
Author: mcourtot
Date: 2008-11-10 21:56:59 +0000 (Mon, 10 Nov 2008)
Log Message:
-----------
added external-byhand.ow (note - would be nice to have list of branches as external property)l
Modified Paths:
--------------
trunk/src/tools/build/OBITools/OBITools.jar
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/OBIMerger.java
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From: <mco...@us...> - 2008-11-10 19:19:08
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Revision: 1140
http://obi.svn.sourceforge.net/obi/?rev=1140&view=rev
Author: mcourtot
Date: 2008-11-10 19:19:03 +0000 (Mon, 10 Nov 2008)
Log Message:
-----------
removed label of relation quality_borne_by from Quality.owl file and added it in Relations.owl file
Modified Paths:
--------------
trunk/src/ontology/branches/Quality.owl
trunk/src/ontology/branches/Relations.owl
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From: <mco...@us...> - 2008-11-10 19:11:18
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Revision: 1139
http://obi.svn.sourceforge.net/obi/?rev=1139&view=rev
Author: mcourtot
Date: 2008-11-10 19:11:15 +0000 (Mon, 10 Nov 2008)
Log Message:
-----------
picks up on defined classes now
check URI of OBI classes not on presence of "OBI", but on presence of "obofoudnry", in order to flag classes with URIs like http://purl.obofoundry.org/Class_x
Modified Paths:
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trunk/src/tools/build/OBITools/src/ca/bccrc/obi/BranchesReporter.java
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