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From: <mco...@us...> - 2008-11-26 22:22:36
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Revision: 1213
http://obi.svn.sourceforge.net/obi/?rev=1213&view=rev
Author: mcourtot
Date: 2008-11-26 22:22:32 +0000 (Wed, 26 Nov 2008)
Log Message:
-----------
updated IDs of syringe and needle which are the only 2 new classes created in Instrument
this has been done manually as we need to process the Instrument file to extract msi terms
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2008-11-26 22:15:46
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Revision: 1212
http://obi.svn.sourceforge.net/obi/?rev=1212&view=rev
Author: alanr
Date: 2008-11-26 22:15:41 +0000 (Wed, 26 Nov 2008)
Log Message:
-----------
add definition source being the full uri of the msi term
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
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From: <fgi...@us...> - 2008-11-26 10:45:16
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Revision: 1211
http://obi.svn.sourceforge.net/obi/?rev=1211&view=rev
Author: fgibson_sf
Date: 2008-11-26 10:45:07 +0000 (Wed, 26 Nov 2008)
Log Message:
-----------
-Changed the domain and range of has_specified_input/output to be material entity and not continuant as only material entities can bear roles.
-Added domain and range of inputs_specified_data and outputs_specified_data to be occurent and information entity
-Replaced all the wrong restrictions in the form, has_output some data, with outputs_specified_data some ice, on the PA and DT branches
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Relations.owl
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From: <al...@us...> - 2008-11-26 03:35:54
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Revision: 1210
http://obi.svn.sourceforge.net/obi/?rev=1210&view=rev
Author: alanr
Date: 2008-11-26 03:35:48 +0000 (Wed, 26 Nov 2008)
Log Message:
-----------
index.html doesn't work
Removed Paths:
-------------
trunk/src/ontology/branches/index.html
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From: <al...@us...> - 2008-11-26 03:32:56
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Revision: 1209
http://obi.svn.sourceforge.net/obi/?rev=1209&view=rev
Author: alanr
Date: 2008-11-26 03:32:54 +0000 (Wed, 26 Nov 2008)
Log Message:
-----------
mime
Modified Paths:
--------------
trunk/src/ontology/branches/obi.obo
Property Changed:
----------------
trunk/src/ontology/branches/index.html
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From: <al...@us...> - 2008-11-26 03:30:19
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Revision: 1208
http://obi.svn.sourceforge.net/obi/?rev=1208&view=rev
Author: alanr
Date: 2008-11-26 03:30:18 +0000 (Wed, 26 Nov 2008)
Log Message:
-----------
let trailing / work for purl.obofoundry.org/obo/obi/
Added Paths:
-----------
trunk/src/ontology/branches/index.html
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From: <mco...@us...> - 2008-11-25 20:14:18
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Revision: 1207
http://obi.svn.sourceforge.net/obi/?rev=1207&view=rev
Author: mcourtot
Date: 2008-11-25 20:14:13 +0000 (Tue, 25 Nov 2008)
Log Message:
-----------
added IAO import, namespace
Modified Paths:
--------------
trunk/src/tools/build/OBITools/OBITools.jar
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/OBIMerger.java
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From: <al...@us...> - 2008-11-25 06:33:29
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Revision: 1206
http://obi.svn.sourceforge.net/obi/?rev=1206&view=rev
Author: alanr
Date: 2008-11-25 06:33:25 +0000 (Tue, 25 Nov 2008)
Log Message:
-----------
ontology uri relationship
Modified Paths:
--------------
trunk/src/ontology/external/ro.owl
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From: <al...@us...> - 2008-11-25 06:32:23
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Revision: 1205
http://obi.svn.sourceforge.net/obi/?rev=1205&view=rev
Author: alanr
Date: 2008-11-25 06:32:18 +0000 (Tue, 25 Nov 2008)
Log Message:
-----------
use relationship instead of ro
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl.template
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From: <al...@us...> - 2008-11-25 05:59:30
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Revision: 1204
http://obi.svn.sourceforge.net/obi/?rev=1204&view=rev
Author: alanr
Date: 2008-11-25 05:59:26 +0000 (Tue, 25 Nov 2008)
Log Message:
-----------
update for versioned iao
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl.template
trunk/src/ontology/branches/obi.repository.template
trunk/src/ontology/branches/obil.owl
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From: <al...@us...> - 2008-11-25 04:39:06
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Revision: 1203
http://obi.svn.sourceforge.net/obi/?rev=1203&view=rev
Author: alanr
Date: 2008-11-25 04:39:02 +0000 (Tue, 25 Nov 2008)
Log Message:
-----------
tagged iao svn:externals
Property Changed:
----------------
trunk/src/ontology/external/
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From: <mco...@us...> - 2008-11-25 01:24:54
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Revision: 1202
http://obi.svn.sourceforge.net/obi/?rev=1202&view=rev
Author: mcourtot
Date: 2008-11-25 01:24:51 +0000 (Tue, 25 Nov 2008)
Log Message:
-----------
added IAO import
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl.template
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From: <mco...@us...> - 2008-11-25 01:20:35
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Revision: 1201
http://obi.svn.sourceforge.net/obi/?rev=1201&view=rev
Author: mcourtot
Date: 2008-11-25 01:20:31 +0000 (Tue, 25 Nov 2008)
Log Message:
-----------
removed duplicate class curation status, which has been moved with annotation properties
Modified Paths:
--------------
trunk/src/ontology/external/IAO.owl
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From: <mco...@us...> - 2008-11-25 01:12:25
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Revision: 1200
http://obi.svn.sourceforge.net/obi/?rev=1200&view=rev
Author: mcourtot
Date: 2008-11-25 01:12:16 +0000 (Tue, 25 Nov 2008)
Log Message:
-----------
updated annotation properties
Modified Paths:
--------------
trunk/src/ontology/branches/AnnotationProperty.owl
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/DataFormatSpecification.owl
trunk/src/ontology/branches/DataTransformation.owl
trunk/src/ontology/branches/DigitalEntityPlus.owl
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/OBI-Function.owl
trunk/src/ontology/branches/Obsolete.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Quality.owl
trunk/src/ontology/branches/Relations.owl
trunk/src/ontology/branches/Role.owl
trunk/src/ontology/branches/external-byhand.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2008-11-25 01:10:52
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Revision: 1199
http://obi.svn.sourceforge.net/obi/?rev=1199&view=rev
Author: mcourtot
Date: 2008-11-25 01:10:49 +0000 (Tue, 25 Nov 2008)
Log Message:
-----------
restored has_curation_status (IAO_0000114) and branch (IAO_0000113) annotation properties
Modified Paths:
--------------
trunk/src/ontology/external/IAO.owl
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From: <mco...@us...> - 2008-11-25 01:01:01
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Revision: 1198
http://obi.svn.sourceforge.net/obi/?rev=1198&view=rev
Author: mcourtot
Date: 2008-11-25 01:00:52 +0000 (Tue, 25 Nov 2008)
Log Message:
-----------
added missing has_curation_status IAO_000011
copied metadata annotations from ontology-metadata.owl under IAO4
Modified Paths:
--------------
trunk/src/ontology/external/IAO.owl
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From: <mco...@us...> - 2008-11-24 23:24:17
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Revision: 1197
http://obi.svn.sourceforge.net/obi/?rev=1197&view=rev
Author: mcourtot
Date: 2008-11-24 23:24:11 +0000 (Mon, 24 Nov 2008)
Log Message:
-----------
added OBI classes replaced by IAO
Modified Paths:
--------------
trunk/src/ontology/branches/Obsolete.owl
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From: <mco...@us...> - 2008-11-24 22:24:05
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Revision: 1196
http://obi.svn.sourceforge.net/obi/?rev=1196&view=rev
Author: mcourtot
Date: 2008-11-24 22:24:01 +0000 (Mon, 24 Nov 2008)
Log Message:
-----------
IAO in external for local import for now
Modified Paths:
--------------
trunk/src/ontology/external/IAO.owl
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From: <mco...@us...> - 2008-11-24 22:23:33
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Revision: 1195
http://obi.svn.sourceforge.net/obi/?rev=1195&view=rev
Author: mcourtot
Date: 2008-11-24 22:23:23 +0000 (Mon, 24 Nov 2008)
Log Message:
-----------
added import of IAO - thanks Alan :)
Modified Paths:
--------------
trunk/src/ontology/branches/AnnotationProperty.owl
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/DataFormatSpecification.owl
trunk/src/ontology/branches/DataTransformation.owl
trunk/src/ontology/branches/DigitalEntityPlus.owl
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/OBI-Function.owl
trunk/src/ontology/branches/Obsolete.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Quality.owl
trunk/src/ontology/branches/Relations.owl
trunk/src/ontology/branches/Role.owl
trunk/src/ontology/branches/external-byhand.owl
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
trunk/src/ontology/branches/obi-owl-full.owl
trunk/src/ontology/branches/obi.pprj.template
trunk/src/ontology/branches/obil.owl
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From: <al...@us...> - 2008-11-23 10:02:03
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Revision: 1194
http://obi.svn.sourceforge.net/obi/?rev=1194&view=rev
Author: alanr
Date: 2008-11-23 10:01:55 +0000 (Sun, 23 Nov 2008)
Log Message:
-----------
owl version generate from lisp file of almost the same name
Added Paths:
-----------
trunk/src/examples/development/voltage-setting.owl
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From: <al...@us...> - 2008-11-23 10:01:04
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Revision: 1193
http://obi.svn.sourceforge.net/obi/?rev=1193&view=rev
Author: alanr
Date: 2008-11-23 10:01:01 +0000 (Sun, 23 Nov 2008)
Log Message:
-----------
proposed example of device setting
Added Paths:
-----------
trunk/src/examples/development/voltage-setting.lisp
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From: <mco...@us...> - 2008-11-20 20:08:42
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Revision: 1192
http://obi.svn.sourceforge.net/obi/?rev=1192&view=rev
Author: mcourtot
Date: 2008-11-20 20:08:31 +0000 (Thu, 20 Nov 2008)
Log Message:
-----------
added metadata for function_of, role_of and quality_of
Modified Paths:
--------------
trunk/src/ontology/branches/external-byhand.owl
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From: <mco...@us...> - 2008-11-20 19:57:18
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Revision: 1191
http://obi.svn.sourceforge.net/obi/?rev=1191&view=rev
Author: mcourtot
Date: 2008-11-20 19:57:13 +0000 (Thu, 20 Nov 2008)
Log Message:
-----------
updated is_quality_of, is_role_of and is_function_of to use OBO_REL
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Quality.owl
trunk/src/ontology/branches/Relations.owl
trunk/src/ontology/branches/external-byhand.owl
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From: <mco...@us...> - 2008-11-20 00:18:39
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Revision: 1190
http://obi.svn.sourceforge.net/obi/?rev=1190&view=rev
Author: mcourtot
Date: 2008-11-20 00:18:33 +0000 (Thu, 20 Nov 2008)
Log Message:
-----------
corrected URI for bearer_of
added imported from annotation property
Modified Paths:
--------------
trunk/src/ontology/branches/Relations.owl
trunk/src/ontology/branches/external-byhand.owl
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From: <mco...@us...> - 2008-11-19 23:27:44
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Revision: 1189
http://obi.svn.sourceforge.net/obi/?rev=1189&view=rev
Author: mcourtot
Date: 2008-11-19 23:27:39 +0000 (Wed, 19 Nov 2008)
Log Message:
-----------
added check to not re-ID IAO classes: if ($localname =~ /^IAO_(\d+)/) we don't do anything
Modified Paths:
--------------
trunk/src/tools/build/modify-uris.pl
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