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From: <mco...@us...> - 2008-12-05 20:11:18
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Revision: 1263
http://obi.svn.sourceforge.net/obi/?rev=1263&view=rev
Author: mcourtot
Date: 2008-12-05 20:11:15 +0000 (Fri, 05 Dec 2008)
Log Message:
-----------
added obidi.owl (includes assumed individuals) to compute inferred superclasses (had removed it from my local version)
Modified Paths:
--------------
trunk/src/tools/build/OBIrelease.sh
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From: <bjo...@us...> - 2008-12-05 18:10:05
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Revision: 1262
http://obi.svn.sourceforge.net/obi/?rev=1262&view=rev
Author: bjoernpeters
Date: 2008-12-05 18:09:54 +0000 (Fri, 05 Dec 2008)
Log Message:
-----------
Biomat call. Cleaned up organism, and created instance for organization
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <jen...@us...> - 2008-12-05 17:35:47
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Revision: 1261
http://obi.svn.sourceforge.net/obi/?rev=1261&view=rev
Author: jenfostel
Date: 2008-12-05 17:35:44 +0000 (Fri, 05 Dec 2008)
Log Message:
-----------
moved template role out of reagent role class to sibling of reagent role
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <bjo...@us...> - 2008-12-05 15:43:25
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Revision: 1260
http://obi.svn.sourceforge.net/obi/?rev=1260&view=rev
Author: bjoernpeters
Date: 2008-12-05 15:43:15 +0000 (Fri, 05 Dec 2008)
Log Message:
-----------
fixed error I introduced for 'documenting' (using has_input for data)
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2008-12-05 07:29:54
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Revision: 1259
http://obi.svn.sourceforge.net/obi/?rev=1259&view=rev
Author: alanr
Date: 2008-12-05 07:29:50 +0000 (Fri, 05 Dec 2008)
Log Message:
-----------
s/ll/Ill/
Modified Paths:
--------------
trunk/docs/developer/images/assay.pdf
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From: <al...@us...> - 2008-12-05 06:59:48
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Revision: 1258
http://obi.svn.sourceforge.net/obi/?rev=1258&view=rev
Author: alanr
Date: 2008-12-05 06:59:40 +0000 (Fri, 05 Dec 2008)
Log Message:
-----------
add cc-by-sa license and credit
Modified Paths:
--------------
trunk/docs/developer/images/assay.pdf
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From: <bjo...@us...> - 2008-12-05 02:22:11
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Revision: 1257
http://obi.svn.sourceforge.net/obi/?rev=1257&view=rev
Author: bjoernpeters
Date: 2008-12-05 01:57:11 +0000 (Fri, 05 Dec 2008)
Log Message:
-----------
Update of investigation, and its ties to study design, planning and documenting.
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <jen...@us...> - 2008-12-04 17:01:36
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Revision: 1256
http://obi.svn.sourceforge.net/obi/?rev=1256&view=rev
Author: jenfostel
Date: 2008-12-04 17:01:31 +0000 (Thu, 04 Dec 2008)
Log Message:
-----------
added analyte role and definition for specimen; renames biological specimen to subject specimen
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <dan...@us...> - 2008-12-04 11:16:02
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Revision: 1255
http://obi.svn.sourceforge.net/obi/?rev=1255&view=rev
Author: daniel_schober
Date: 2008-12-04 11:15:58 +0000 (Thu, 04 Dec 2008)
Log Message:
-----------
labels set to display correctly and defaulf minimal metadata tags get auto-created on class creation.
Modified Paths:
--------------
releases/2008-11-28/merged/protege/OBI-ProtegeFriendly.pprj
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From: <mco...@us...> - 2008-12-04 01:58:13
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Revision: 1254
http://obi.svn.sourceforge.net/obi/?rev=1254&view=rev
Author: mcourtot
Date: 2008-12-04 01:30:58 +0000 (Thu, 04 Dec 2008)
Log Message:
-----------
updated to use the file ontology-metadata in external/iao to get the annotation properties
updated IDs of annotation properties to IAO IDs
Modified Paths:
--------------
trunk/src/tools/build/OBITools/src/ca/bccrc/obi/BranchesReporter.java
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From: <mco...@us...> - 2008-12-04 00:30:49
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Revision: 1253
http://obi.svn.sourceforge.net/obi/?rev=1253&view=rev
Author: mcourtot
Date: 2008-12-04 00:30:44 +0000 (Thu, 04 Dec 2008)
Log Message:
-----------
added assay drawing from Alan, representing process of measuring glucose in mouse
Added Paths:
-----------
trunk/docs/developer/images/assay.pdf
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From: <dan...@us...> - 2008-12-03 16:36:55
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Revision: 1252
http://obi.svn.sourceforge.net/obi/?rev=1252&view=rev
Author: daniel_schober
Date: 2008-12-03 16:36:49 +0000 (Wed, 03 Dec 2008)
Log Message:
-----------
set ID to rdfs:label display slot in forms tab for .pprj file
Modified Paths:
--------------
releases/2008-09-26/merged/protege/OBI-ProtegeFriendly.pprj
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From: <jen...@us...> - 2008-12-03 15:52:31
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Revision: 1251
http://obi.svn.sourceforge.net/obi/?rev=1251&view=rev
Author: jenfostel
Date: 2008-12-03 15:52:25 +0000 (Wed, 03 Dec 2008)
Log Message:
-----------
created protocol participant class and moved specified input and output, reagent, nutrient there. renamed reagent reporter to label. added substance administered in vivo role
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <bjo...@us...> - 2008-12-03 02:34:46
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Revision: 1250
http://obi.svn.sourceforge.net/obi/?rev=1250&view=rev
Author: bjoernpeters
Date: 2008-12-03 02:34:44 +0000 (Wed, 03 Dec 2008)
Log Message:
-----------
changed the material transformation 'subtraction' to 'DNA subtraction' to free the label for math term.
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2008-12-03 01:06:08
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Revision: 1249
http://obi.svn.sourceforge.net/obi/?rev=1249&view=rev
Author: mcourtot
Date: 2008-12-03 01:06:07 +0000 (Wed, 03 Dec 2008)
Log Message:
-----------
updated annotation properties IDs
alias:preferredTerm=iao:IAO_0000111
alias:definition=iao:IAO_0000115
Modified Paths:
--------------
trunk/src/tools/build/external-templates.txt
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From: <mco...@us...> - 2008-12-03 01:04:57
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Revision: 1248
http://obi.svn.sourceforge.net/obi/?rev=1248&view=rev
Author: mcourtot
Date: 2008-12-03 01:04:51 +0000 (Wed, 03 Dec 2008)
Log Message:
-----------
added fluorescence imported from PATO_0000018 under disposition
moved damages, quality of a solid, gas and liquid, frozen and circular under monadic quality of continuant
generated new externalDerived via script
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2008-12-03 00:23:43
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Revision: 1247
http://obi.svn.sourceforge.net/obi/?rev=1247&view=rev
Author: mcourtot
Date: 2008-12-03 00:23:38 +0000 (Wed, 03 Dec 2008)
Log Message:
-----------
reverted due to inconsistency
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2008-12-03 00:08:33
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Revision: 1246
http://obi.svn.sourceforge.net/obi/?rev=1246&view=rev
Author: mcourtot
Date: 2008-12-03 00:08:29 +0000 (Wed, 03 Dec 2008)
Log Message:
-----------
moved radioactive (PATO_0001741), dead (PATO_0001422), alive (PATO_0001421) under snap:Disposition
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <jen...@us...> - 2008-12-02 22:53:34
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Revision: 1245
http://obi.svn.sourceforge.net/obi/?rev=1245&view=rev
Author: jenfostel
Date: 2008-12-02 22:53:28 +0000 (Tue, 02 Dec 2008)
Log Message:
-----------
re-committing after fixing study subject role class
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <jen...@us...> - 2008-12-02 22:33:16
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Revision: 1244
http://obi.svn.sourceforge.net/obi/?rev=1244&view=rev
Author: jenfostel
Date: 2008-12-02 22:33:14 +0000 (Tue, 02 Dec 2008)
Log Message:
-----------
completed metadata and replaces / edited definitions and examples for study subject class
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <jen...@us...> - 2008-12-02 21:00:50
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Revision: 1243
http://obi.svn.sourceforge.net/obi/?rev=1243&view=rev
Author: jenfostel
Date: 2008-12-02 21:00:47 +0000 (Tue, 02 Dec 2008)
Log Message:
-----------
Role branch; metadata and editing for study participant, specified input and output roles (take #2)
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <jen...@us...> - 2008-12-02 20:59:31
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Revision: 1242
http://obi.svn.sourceforge.net/obi/?rev=1242&view=rev
Author: jenfostel
Date: 2008-12-02 20:59:28 +0000 (Tue, 02 Dec 2008)
Log Message:
-----------
Role branch cleanup; added metadata and adjusted definitions and examples for study participant, specified input and specified output roles
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <fgi...@us...> - 2008-12-02 17:24:28
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Revision: 1241
http://obi.svn.sourceforge.net/obi/?rev=1241&view=rev
Author: fgibson_sf
Date: 2008-12-02 17:24:19 +0000 (Tue, 02 Dec 2008)
Log Message:
-----------
added the functions required for devices, produces_data, process_data
Modified Paths:
--------------
trunk/src/ontology/branches/OBI-Function.owl
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From: <mco...@us...> - 2008-12-01 23:47:36
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Revision: 1240
http://obi.svn.sourceforge.net/obi/?rev=1240&view=rev
Author: mcourtot
Date: 2008-12-01 23:47:33 +0000 (Mon, 01 Dec 2008)
Log Message:
-----------
added release notes release 2008-11-28
Modified Paths:
--------------
trunk/docs/user/release_notes.html
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From: <mco...@us...> - 2008-12-01 23:37:35
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Revision: 1239
http://obi.svn.sourceforge.net/obi/?rev=1239&view=rev
Author: mcourtot
Date: 2008-12-01 23:37:30 +0000 (Mon, 01 Dec 2008)
Log Message:
-----------
uses perl lisp-eval (no knowledge of lisp required for release!), includes iao and external by hand, qc-queries....
Modified Paths:
--------------
trunk/src/tools/build/OBIrelease.sh
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