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From: <mco...@us...> - 2008-12-29 19:34:20
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Revision: 1313
http://obi.svn.sourceforge.net/obi/?rev=1313&view=rev
Author: mcourtot
Date: 2008-12-29 19:34:17 +0000 (Mon, 29 Dec 2008)
Log Message:
-----------
removed restriction that was added on an MSI class and doesn't get stripped by Jena:
<owl:Class rdf:about="http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400013">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obofoundry.org/obo/OBI_0000306"/>
<owl:someValuesFrom rdf:resource="http://purl.obofoundry.org/obo/OBI_0000392"/>
</owl:Restriction>
</rdfs:subClassOf>
Modified Paths:
--------------
releases/2008-12-26/branches/InstrumentAndPart.owl
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From: <mco...@us...> - 2008-12-29 19:27:13
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Revision: 1312
http://obi.svn.sourceforge.net/obi/?rev=1312&view=rev
Author: mcourtot
Date: 2008-12-29 19:27:09 +0000 (Mon, 29 Dec 2008)
Log Message:
-----------
**** branch files
Modified Paths:
--------------
releases/2008-12-26/branches/InstrumentAndPart.owl
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From: <mco...@us...> - 2008-12-29 19:21:57
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Revision: 1311
http://obi.svn.sourceforge.net/obi/?rev=1311&view=rev
Author: mcourtot
Date: 2008-12-29 19:21:54 +0000 (Mon, 29 Dec 2008)
Log Message:
-----------
removed MSI terms
Modified Paths:
--------------
releases/2008-12-26/branches/InstrumentAndPart.owl
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From: <mco...@us...> - 2008-12-29 19:06:18
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Revision: 1310
http://obi.svn.sourceforge.net/obi/?rev=1310&view=rev
Author: mcourtot
Date: 2008-12-29 19:06:15 +0000 (Mon, 29 Dec 2008)
Log Message:
-----------
changed label of curation status property to has curation status following replacement of OBI property by IAO one
Modified Paths:
--------------
trunk/src/tools/build/qc-queries.lisp
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From: <mco...@us...> - 2008-12-29 18:47:47
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Revision: 1309
http://obi.svn.sourceforge.net/obi/?rev=1309&view=rev
Author: mcourtot
Date: 2008-12-29 18:47:40 +0000 (Mon, 29 Dec 2008)
Log Message:
-----------
created assumed-individuals file for release
Added Paths:
-----------
releases/2008-12-26/branches/assumed-individuals.owl
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From: <mco...@us...> - 2008-12-23 23:14:36
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Revision: 1308
http://obi.svn.sourceforge.net/obi/?rev=1308&view=rev
Author: mcourtot
Date: 2008-12-23 23:14:28 +0000 (Tue, 23 Dec 2008)
Log Message:
-----------
created merged directory for release
added list-purls.xml
Added Paths:
-----------
releases/2008-12-26/merged/
releases/2008-12-26/merged/list-purls.xml
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From: <mco...@us...> - 2008-12-23 23:05:30
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Revision: 1307
http://obi.svn.sourceforge.net/obi/?rev=1307&view=rev
Author: mcourtot
Date: 2008-12-23 23:05:29 +0000 (Tue, 23 Dec 2008)
Log Message:
-----------
svn copy of the external directory for release
Added Paths:
-----------
releases/2008-12-26/external/
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From: <mco...@us...> - 2008-12-23 22:58:02
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Revision: 1304
http://obi.svn.sourceforge.net/obi/?rev=1304&view=rev
Author: mcourtot
Date: 2008-12-23 22:34:42 +0000 (Tue, 23 Dec 2008)
Log Message:
-----------
added directory for release
Added Paths:
-----------
releases/2008-12-26/
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From: <mco...@us...> - 2008-12-23 22:58:01
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Revision: 1305
http://obi.svn.sourceforge.net/obi/?rev=1305&view=rev
Author: mcourtot
Date: 2008-12-23 22:38:20 +0000 (Tue, 23 Dec 2008)
Log Message:
-----------
newids files in preparation for release
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/DataTransformation.owl
trunk/src/ontology/branches/DigitalEntityPlus.owl
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/OBI-Function.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Quality.owl
trunk/src/ontology/branches/Relations.owl
trunk/src/ontology/branches/Role.owl
trunk/src/ontology/branches/externalDerived.owl
trunk/src/ontology/branches/obi-quick-id.owl
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From: <mco...@us...> - 2008-12-23 22:57:54
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Revision: 1306
http://obi.svn.sourceforge.net/obi/?rev=1306&view=rev
Author: mcourtot
Date: 2008-12-23 22:44:51 +0000 (Tue, 23 Dec 2008)
Log Message:
-----------
copy of branch files for release
Added Paths:
-----------
releases/2008-12-26/branches/
releases/2008-12-26/branches/AnnotationProperty.owl
releases/2008-12-26/branches/Biomaterial.owl
releases/2008-12-26/branches/DataFormatSpecification.owl
releases/2008-12-26/branches/DataTransformation.owl
releases/2008-12-26/branches/DigitalEntityPlus.owl
releases/2008-12-26/branches/InstrumentAndPart.owl
releases/2008-12-26/branches/OBI-Function.owl
releases/2008-12-26/branches/Obsolete.owl
releases/2008-12-26/branches/PlanAndPlannedProcess.owl
releases/2008-12-26/branches/Quality.owl
releases/2008-12-26/branches/Relations.owl
releases/2008-12-26/branches/Role.owl
releases/2008-12-26/branches/external-byhand.owl
releases/2008-12-26/branches/external.owl
releases/2008-12-26/branches/externalDerived.owl
releases/2008-12-26/branches/obi-lsw.owl.template
releases/2008-12-26/branches/obi-owl-full.owl
releases/2008-12-26/branches/obi-quick-id.owl
releases/2008-12-26/branches/obi.obo
releases/2008-12-26/branches/obi.owl.template
releases/2008-12-26/branches/obi.pprj.annotations.templates
releases/2008-12-26/branches/obi.pprj.template
releases/2008-12-26/branches/obi.repository.template
releases/2008-12-26/branches/obi.repository.template.pc
releases/2008-12-26/branches/obid.owl
releases/2008-12-26/branches/obidi.owl
releases/2008-12-26/branches/obil.owl
Removed Paths:
-------------
releases/2008-12-26/branches/AnnotationProperty.owl
releases/2008-12-26/branches/Biomaterial.owl
releases/2008-12-26/branches/DataFormatSpecification.owl
releases/2008-12-26/branches/DataTransformation.owl
releases/2008-12-26/branches/DigitalEntityPlus.owl
releases/2008-12-26/branches/InstrumentAndPart.owl
releases/2008-12-26/branches/OBI-Function.owl
releases/2008-12-26/branches/Obsolete.owl
releases/2008-12-26/branches/PlanAndPlannedProcess.owl
releases/2008-12-26/branches/Quality.owl
releases/2008-12-26/branches/Relations.owl
releases/2008-12-26/branches/Role.owl
releases/2008-12-26/branches/external-byhand.owl
releases/2008-12-26/branches/external.owl
releases/2008-12-26/branches/externalDerived.owl
releases/2008-12-26/branches/obi-lsw.owl.template
releases/2008-12-26/branches/obi-owl-full.owl
releases/2008-12-26/branches/obi-quick-id.owl
releases/2008-12-26/branches/obi.obo
releases/2008-12-26/branches/obi.owl.template
releases/2008-12-26/branches/obi.pprj.annotations.templates
releases/2008-12-26/branches/obi.pprj.template
releases/2008-12-26/branches/obi.repository.template
releases/2008-12-26/branches/obi.repository.template.pc
releases/2008-12-26/branches/obid.owl
releases/2008-12-26/branches/obidi.owl
releases/2008-12-26/branches/obil.owl
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From: <al...@us...> - 2008-12-23 05:23:12
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Revision: 1303
http://obi.svn.sourceforge.net/obi/?rev=1303&view=rev
Author: alanr
Date: 2008-12-23 05:23:09 +0000 (Tue, 23 Dec 2008)
Log Message:
-----------
never mind last change re 'imported from'. I'm an idio
Modified Paths:
--------------
trunk/src/ontology/branches/external-byhand.owl
trunk/src/ontology/branches/external.owl
trunk/src/tools/build/create-external-derived.lisp
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From: <al...@us...> - 2008-12-23 05:09:43
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Revision: 1302
http://obi.svn.sourceforge.net/obi/?rev=1302&view=rev
Author: alanr
Date: 2008-12-23 05:09:39 +0000 (Tue, 23 Dec 2008)
Log Message:
-----------
transition to IAO 'imported from'
Modified Paths:
--------------
trunk/src/tools/build/create-external-derived.lisp
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From: <al...@us...> - 2008-12-23 05:06:20
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Revision: 1301
http://obi.svn.sourceforge.net/obi/?rev=1301&view=rev
Author: alanr
Date: 2008-12-23 05:06:17 +0000 (Tue, 23 Dec 2008)
Log Message:
-----------
replaced obsolete obi 'imported from' with iao equivalent
Modified Paths:
--------------
trunk/src/ontology/branches/external-byhand.owl
trunk/src/ontology/branches/external.owl
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From: <al...@us...> - 2008-12-23 04:51:05
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Revision: 1300
http://obi.svn.sourceforge.net/obi/?rev=1300&view=rev
Author: alanr
Date: 2008-12-23 04:51:02 +0000 (Tue, 23 Dec 2008)
Log Message:
-----------
lots of xsd:strings instead of xml:lang=en in english text, causing display problems in protege. Fix should be automated
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/OBI-Function.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Quality.owl
trunk/src/ontology/branches/Role.owl
trunk/src/ontology/branches/obil.owl
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From: <mco...@us...> - 2008-12-22 23:49:12
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Revision: 1299
http://obi.svn.sourceforge.net/obi/?rev=1299&view=rev
Author: mcourtot
Date: 2008-12-22 23:49:08 +0000 (Mon, 22 Dec 2008)
Log Message:
-----------
updated repositories to remove TheRest.owl
Modified Paths:
--------------
trunk/src/ontology/branches/obi.repository.template
trunk/src/ontology/branches/obi.repository.template.pc
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From: <mco...@us...> - 2008-12-22 23:44:08
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Revision: 1298
http://obi.svn.sourceforge.net/obi/?rev=1298&view=rev
Author: mcourtot
Date: 2008-12-22 23:44:02 +0000 (Mon, 22 Dec 2008)
Log Message:
-----------
modified to update date and svn revision number in obi.owl instead of the now deleted TheRest.owl
Modified Paths:
--------------
trunk/src/tools/build/OBIrelease.sh
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From: <mco...@us...> - 2008-12-22 23:39:44
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Revision: 1297
http://obi.svn.sourceforge.net/obi/?rev=1297&view=rev
Author: mcourtot
Date: 2008-12-22 23:39:41 +0000 (Mon, 22 Dec 2008)
Log Message:
-----------
deleted TheRest.owl as per decision of coordinators. Creators/contributors information has been moved to obi.owl. You will need to update your obi.owl.template and then copy it to replace your current obi.owl
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl.template
Removed Paths:
-------------
trunk/src/ontology/branches/TheRest.owl
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From: <mco...@us...> - 2008-12-22 22:56:35
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Revision: 1293
http://obi.svn.sourceforge.net/obi/?rev=1293&view=rev
Author: mcourtot
Date: 2008-12-22 21:43:52 +0000 (Mon, 22 Dec 2008)
Log Message:
-----------
procrastinating :) - fixing metadata for newly added classes: definition editor, preferred term, curation status, definition source
material transformation objective, manufacturing objective, manufacturing
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2008-12-22 22:49:27
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Revision: 1294
http://obi.svn.sourceforge.net/obi/?rev=1294&view=rev
Author: mcourtot
Date: 2008-12-22 22:24:43 +0000 (Mon, 22 Dec 2008)
Log Message:
-----------
updated- corrected all metadata
- one definition source per field
- one definition editor per field
- use of GROUP:, PERSON:, etc
- addition of preferred term (this is a required minimal metadata, and should be a copy of the label)
- addition/check of curation status
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <mco...@us...> - 2008-12-22 22:49:03
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Revision: 1295
http://obi.svn.sourceforge.net/obi/?rev=1295&view=rev
Author: mcourtot
Date: 2008-12-22 22:39:17 +0000 (Mon, 22 Dec 2008)
Log Message:
-----------
the ones I missed :)
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <mco...@us...> - 2008-12-22 22:48:36
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Revision: 1296
http://obi.svn.sourceforge.net/obi/?rev=1296&view=rev
Author: mcourtot
Date: 2008-12-22 22:47:21 +0000 (Mon, 22 Dec 2008)
Log Message:
-----------
moved label of relation results_from from Quality.owl file to Relations.owl file
Modified Paths:
--------------
trunk/src/ontology/branches/Quality.owl
trunk/src/ontology/branches/Relations.owl
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From: <mco...@us...> - 2008-12-22 21:29:44
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Revision: 1292
http://obi.svn.sourceforge.net/obi/?rev=1292&view=rev
Author: mcourtot
Date: 2008-12-22 21:29:42 +0000 (Mon, 22 Dec 2008)
Log Message:
-----------
updated meatadate for newly created regulatory agency class
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <mco...@us...> - 2008-12-22 19:44:50
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Revision: 1291
http://obi.svn.sourceforge.net/obi/?rev=1291&view=rev
Author: mcourtot
Date: 2008-12-22 19:44:47 +0000 (Mon, 22 Dec 2008)
Log Message:
-----------
added metadata for placeholder _defined_output. Assigned OBI ID as well, so that it can be automatically removed for release.
Modified Paths:
--------------
trunk/src/ontology/branches/Quality.owl
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From: <mco...@us...> - 2008-12-22 19:35:30
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Revision: 1290
http://obi.svn.sourceforge.net/obi/?rev=1290&view=rev
Author: mcourtot
Date: 2008-12-22 19:35:25 +0000 (Mon, 22 Dec 2008)
Log Message:
-----------
deleted IAO.owl file that has been replaced by external SVN mechanism fetching files into iao directory
Removed Paths:
-------------
trunk/src/ontology/external/IAO.owl
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From: <fgi...@us...> - 2008-12-22 12:45:26
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Revision: 1289
http://obi.svn.sourceforge.net/obi/?rev=1289&view=rev
Author: fgibson_sf
Date: 2008-12-22 12:45:15 +0000 (Mon, 22 Dec 2008)
Log Message:
-----------
added another class to obi-quick-id.owl
Modified Paths:
--------------
trunk/src/ontology/branches/obi-quick-id.owl
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