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From: <mco...@us...> - 2008-11-10 19:08:12
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Revision: 1138
http://obi.svn.sourceforge.net/obi/?rev=1138&view=rev
Author: mcourtot
Date: 2008-11-10 19:08:09 +0000 (Mon, 10 Nov 2008)
Log Message:
-----------
removed extra instances of curation status
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/Quality.owl
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From: <mco...@us...> - 2008-11-10 18:02:39
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Revision: 1137
http://obi.svn.sourceforge.net/obi/?rev=1137&view=rev
Author: mcourtot
Date: 2008-11-10 18:02:36 +0000 (Mon, 10 Nov 2008)
Log Message:
-----------
removed declaration of OBI relation quality_borne_by
Modified Paths:
--------------
trunk/src/ontology/external/ro.owl
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From: <mco...@us...> - 2008-11-10 18:02:08
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Revision: 1136
http://obi.svn.sourceforge.net/obi/?rev=1136&view=rev
Author: mcourtot
Date: 2008-11-10 18:02:04 +0000 (Mon, 10 Nov 2008)
Log Message:
-----------
moved quality_borne_by from external/ro.owl
Modified Paths:
--------------
trunk/src/ontology/branches/Relations.owl
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From: <p_r...@us...> - 2008-11-08 10:25:40
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Revision: 1135
http://obi.svn.sourceforge.net/obi/?rev=1135&view=rev
Author: p_rocca_serra
Date: 2008-11-08 10:25:31 +0000 (Sat, 08 Nov 2008)
Log Message:
-----------
Follow-up on Nov 6 call:
adding restriciton on weight measurement assay (realization of evaluant role)
-> classify under assay but not under analyte measuring assay
Fixing metadata on some classes
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <p_r...@us...> - 2008-11-08 09:47:34
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Revision: 1134
http://obi.svn.sourceforge.net/obi/?rev=1134&view=rev
Author: p_rocca_serra
Date: 2008-11-08 09:47:30 +0000 (Sat, 08 Nov 2008)
Log Message:
-----------
Modifications:
What a pain in the a... that was!
moved analyte_role and evaluant_role from PA branch to Role Branch
Never again
Modified Paths:
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trunk/src/ontology/branches/Role.owl
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From: <p_r...@us...> - 2008-11-08 09:46:10
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Revision: 1133
http://obi.svn.sourceforge.net/obi/?rev=1133&view=rev
Author: p_rocca_serra
Date: 2008-11-08 09:46:04 +0000 (Sat, 08 Nov 2008)
Log Message:
-----------
Modification following PA call Nov 6,2008:
revision of assay definition in order to specify what the output data is about.
Attempt to use is_about relation from IAO.
See defined class 'analyte measuring assay'
asserted class: 'measuring glucose in blood serum'
check restrictions (Is realization of analyte and evaluant role born by ...)
no errors reported by classifier
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <p_r...@us...> - 2008-11-08 08:50:58
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Revision: 1132
http://obi.svn.sourceforge.net/obi/?rev=1132&view=rev
Author: p_rocca_serra
Date: 2008-11-08 08:50:53 +0000 (Sat, 08 Nov 2008)
Log Message:
-----------
Modification following BM call Nov, 7th 2008:
Preliminary commit 5
setting restrictions on whole mount tissue
now classifies under AO/EOO
no error from classifier
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <p_r...@us...> - 2008-11-08 08:17:37
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Revision: 1131
http://obi.svn.sourceforge.net/obi/?rev=1131&view=rev
Author: p_rocca_serra
Date: 2008-11-08 08:17:33 +0000 (Sat, 08 Nov 2008)
Log Message:
-----------
Modification following BM call Nov, 7th 2008:
Preliminary commit 4
broncho alveolar lavage:
removing n&s condition (entity of organismal origin)
placed under material entity
classifies under 'artefactobject/entity of organism origin
as expected
no error from classifier
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <p_r...@us...> - 2008-11-08 08:13:16
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Revision: 1130
http://obi.svn.sourceforge.net/obi/?rev=1130&view=rev
Author: p_rocca_serra
Date: 2008-11-08 08:13:12 +0000 (Sat, 08 Nov 2008)
Log Message:
-----------
Modification following BM call Nov, 7th 2008:
Preliminary commit 2
addition of derives_from restriction to blood serum, bronchio-alveolar lavage, cell culture
modification of restriction on entity of organismal origin :
is_output_of some 'material transformation' (instead of protocol application')
entity of organismal origin now classifies under artefact object (as expected)
no error from classifier
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <p_r...@us...> - 2008-11-08 08:09:28
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Revision: 1129
http://obi.svn.sourceforge.net/obi/?rev=1129&view=rev
Author: p_rocca_serra
Date: 2008-11-08 08:09:23 +0000 (Sat, 08 Nov 2008)
Log Message:
-----------
Modification following BM call Nov, 7th 2008:
Preliminary commit 2
addition of derives_from restriction to blood serum, bronchio-alveolar lavage, cell culture
modification of restriction on entity of organismal origin : derives_from (organism or organism part) (to start with)
no error from classifier
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <p_r...@us...> - 2008-11-08 07:58:18
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Revision: 1128
http://obi.svn.sourceforge.net/obi/?rev=1128&view=rev
Author: p_rocca_serra
Date: 2008-11-08 07:58:16 +0000 (Sat, 08 Nov 2008)
Log Message:
-----------
Modification following BM call Nov, 7th 2008:
Preliminary commit
removing restriction 'has_role specimen_role or reagent role'
whole mount tissue
cell culture supernatant
blood plasma
environmental matter
from entity of organism origin
relocation of peritoneum and heart under CARO: multitissue structure
no error in classifier
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <p_r...@us...> - 2008-11-07 21:25:15
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Revision: 1127
http://obi.svn.sourceforge.net/obi/?rev=1127&view=rev
Author: p_rocca_serra
Date: 2008-11-07 21:25:12 +0000 (Fri, 07 Nov 2008)
Log Message:
-----------
Restriction change on Material Separation
removing has_only one input and has min 2 output
replaced simply by has_input/has_output some material entity
will have to be refined to incorporate 'located_in site' constraint (cf Frank post wrt gel electrophoresis)
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <jam...@us...> - 2008-11-07 17:20:18
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Revision: 1126
http://obi.svn.sourceforge.net/obi/?rev=1126&view=rev
Author: jamesmalone
Date: 2008-11-07 17:20:07 +0000 (Fri, 07 Nov 2008)
Log Message:
-----------
Added some more objectives to DTs
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <jam...@us...> - 2008-11-07 17:18:59
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Revision: 1125
http://obi.svn.sourceforge.net/obi/?rev=1125&view=rev
Author: jamesmalone
Date: 2008-11-07 17:18:49 +0000 (Fri, 07 Nov 2008)
Log Message:
-----------
blug
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <jam...@us...> - 2008-11-07 17:18:30
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Revision: 1124
http://obi.svn.sourceforge.net/obi/?rev=1124&view=rev
Author: jamesmalone
Date: 2008-11-07 17:18:19 +0000 (Fri, 07 Nov 2008)
Log Message:
-----------
adding more DT objectives
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <jam...@us...> - 2008-11-07 14:34:50
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Revision: 1123
http://obi.svn.sourceforge.net/obi/?rev=1123&view=rev
Author: jamesmalone
Date: 2008-11-07 14:34:47 +0000 (Fri, 07 Nov 2008)
Log Message:
-----------
Gating complete
Loess complete
additional objectives added
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <jam...@us...> - 2008-11-07 14:33:56
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Revision: 1122
http://obi.svn.sourceforge.net/obi/?rev=1122&view=rev
Author: jamesmalone
Date: 2008-11-07 14:33:49 +0000 (Fri, 07 Nov 2008)
Log Message:
-----------
additional data transformation objectives
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <jam...@us...> - 2008-11-07 11:17:40
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Revision: 1121
http://obi.svn.sourceforge.net/obi/?rev=1121&view=rev
Author: jamesmalone
Date: 2008-11-07 11:17:37 +0000 (Fri, 07 Nov 2008)
Log Message:
-----------
first commit of DT hypothesis testing spreadsheet
Added Paths:
-----------
trunk/docs/developer/DT/dt_hyp_tests.xls
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From: <p_r...@us...> - 2008-11-06 18:09:00
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Revision: 1120
http://obi.svn.sourceforge.net/obi/?rev=1120&view=rev
Author: p_rocca_serra
Date: 2008-11-06 18:08:50 +0000 (Thu, 06 Nov 2008)
Log Message:
-----------
New import glucose: CHEBI:17234
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
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From: <p_r...@us...> - 2008-11-06 18:07:44
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Revision: 1119
http://obi.svn.sourceforge.net/obi/?rev=1119&view=rev
Author: p_rocca_serra
Date: 2008-11-06 18:07:32 +0000 (Thu, 06 Nov 2008)
Log Message:
-----------
New Import: Glucose (for use case in PA)
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
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From: <bjo...@us...> - 2008-11-06 18:07:11
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Revision: 1118
http://obi.svn.sourceforge.net/obi/?rev=1118&view=rev
Author: bjoernpeters
Date: 2008-11-06 18:07:08 +0000 (Thu, 06 Nov 2008)
Log Message:
-----------
PlanAndPlannedProcess call - now use the about relationship, and update assay, analyte and evaluant
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <all...@us...> - 2008-11-05 15:23:36
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Revision: 1117
http://obi.svn.sourceforge.net/obi/?rev=1117&view=rev
Author: allysonlister
Date: 2008-11-05 15:23:22 +0000 (Wed, 05 Nov 2008)
Log Message:
-----------
Great draft! Added some bits and pieces to the intro/conclusion, and made some small changes to some of the earlier sections. Everything's tracked, so it can be removed or accepted as people deem it appropriate. Have committed back to the main document, as that's what tracking changes and SVN versions are for! ;)
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <mco...@us...> - 2008-11-04 15:07:39
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Revision: 1116
http://obi.svn.sourceforge.net/obi/?rev=1116&view=rev
Author: mcourtot
Date: 2008-11-04 15:07:28 +0000 (Tue, 04 Nov 2008)
Log Message:
-----------
updated editors for my sections
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <mco...@us...> - 2008-11-04 13:28:49
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Revision: 1115
http://obi.svn.sourceforge.net/obi/?rev=1115&view=rev
Author: mcourtot
Date: 2008-11-04 13:28:46 +0000 (Tue, 04 Nov 2008)
Log Message:
-----------
removed duplicate label for polypeptide
Modified Paths:
--------------
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2008-11-04 13:24:47
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Revision: 1114
http://obi.svn.sourceforge.net/obi/?rev=1114&view=rev
Author: mcourtot
Date: 2008-11-04 13:24:45 +0000 (Tue, 04 Nov 2008)
Log Message:
-----------
removed from clause to query new neurocommons
Modified Paths:
--------------
trunk/src/tools/build/external-templates.txt
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