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From: <jam...@us...> - 2009-01-26 10:06:23
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Revision: 1388
http://obi.svn.sourceforge.net/obi/?rev=1388&view=rev
Author: jamesmalone
Date: 2009-01-26 10:06:19 +0000 (Mon, 26 Jan 2009)
Log Message:
-----------
Dev call minutes from wed 21st Jan 2009
Added Paths:
-----------
trunk/web/htdocs/notes/developers/2009/
trunk/web/htdocs/notes/developers/2009/dev call minutes 21_jan_2009.txt
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From: <al...@us...> - 2009-01-25 05:52:51
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Revision: 1387
http://obi.svn.sourceforge.net/obi/?rev=1387&view=rev
Author: alanr
Date: 2009-01-25 05:52:47 +0000 (Sun, 25 Jan 2009)
Log Message:
-----------
typo
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-01-25 04:55:00
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Revision: 1386
http://obi.svn.sourceforge.net/obi/?rev=1386&view=rev
Author: alanr
Date: 2009-01-25 04:54:55 +0000 (Sun, 25 Jan 2009)
Log Message:
-----------
and another annotation property
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <al...@us...> - 2009-01-25 04:09:28
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Revision: 1385
http://obi.svn.sourceforge.net/obi/?rev=1385&view=rev
Author: alanr
Date: 2009-01-25 04:09:21 +0000 (Sun, 25 Jan 2009)
Log Message:
-----------
minor cleanups, e.g. curation status instance detritus
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Role.owl
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From: <al...@us...> - 2009-01-25 03:22:25
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Revision: 1384
http://obi.svn.sourceforge.net/obi/?rev=1384&view=rev
Author: alanr
Date: 2009-01-25 03:22:22 +0000 (Sun, 25 Jan 2009)
Log Message:
-----------
declare another annotation property
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/Role.owl
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From: <al...@us...> - 2009-01-24 00:16:05
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Revision: 1383
http://obi.svn.sourceforge.net/obi/?rev=1383&view=rev
Author: alanr
Date: 2009-01-24 00:15:55 +0000 (Sat, 24 Jan 2009)
Log Message:
-----------
narrow possibilities for adding a material
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-01-24 00:04:44
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Revision: 1382
http://obi.svn.sourceforge.net/obi/?rev=1382&view=rev
Author: alanr
Date: 2009-01-24 00:04:40 +0000 (Sat, 24 Jan 2009)
Log Message:
-----------
save svn:externals
Property Changed:
----------------
trunk/src/ontology/external/
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From: <al...@us...> - 2009-01-23 23:30:49
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Revision: 1381
http://obi.svn.sourceforge.net/obi/?rev=1381&view=rev
Author: alanr
Date: 2009-01-23 23:30:46 +0000 (Fri, 23 Jan 2009)
Log Message:
-----------
more on concentration
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/Quality.owl
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From: <al...@us...> - 2009-01-23 22:55:49
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Revision: 1380
http://obi.svn.sourceforge.net/obi/?rev=1380&view=rev
Author: alanr
Date: 2009-01-23 22:55:45 +0000 (Fri, 23 Jan 2009)
Log Message:
-----------
add concentration first draft
Modified Paths:
--------------
trunk/src/ontology/branches/Quality.owl
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From: <al...@us...> - 2009-01-23 22:55:18
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Revision: 1379
http://obi.svn.sourceforge.net/obi/?rev=1379&view=rev
Author: alanr
Date: 2009-01-23 22:55:14 +0000 (Fri, 23 Jan 2009)
Log Message:
-----------
typo
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <al...@us...> - 2009-01-23 22:54:46
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Revision: 1378
http://obi.svn.sourceforge.net/obi/?rev=1378&view=rev
Author: alanr
Date: 2009-01-23 22:54:43 +0000 (Fri, 23 Jan 2009)
Log Message:
-----------
add towards relation
Modified Paths:
--------------
trunk/src/ontology/branches/external-byhand.owl
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From: <mco...@us...> - 2009-01-23 22:43:54
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Revision: 1376
http://obi.svn.sourceforge.net/obi/?rev=1376&view=rev
Author: mcourtot
Date: 2009-01-23 22:30:19 +0000 (Fri, 23 Jan 2009)
Log Message:
-----------
moved report figure, report graph, contour plot, density plot, dot plot in preparation for new IAO tag import
Modified Paths:
--------------
trunk/src/ontology/branches/DigitalEntityPlus.owl
trunk/src/ontology/branches/Obsolete.owl
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From: <mco...@us...> - 2009-01-23 22:43:50
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Revision: 1377
http://obi.svn.sourceforge.net/obi/?rev=1377&view=rev
Author: mcourtot
Date: 2009-01-23 22:43:46 +0000 (Fri, 23 Jan 2009)
Log Message:
-----------
updated to new IAO tag
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl.template
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From: <al...@us...> - 2009-01-23 18:58:17
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Revision: 1375
http://obi.svn.sourceforge.net/obi/?rev=1375&view=rev
Author: alanr
Date: 2009-01-23 18:58:11 +0000 (Fri, 23 Jan 2009)
Log Message:
-----------
per branch call today. Added definition of scattered molecular aggregate and relation has grain and inverse grain of
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/Relations.owl
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From: <jam...@us...> - 2009-01-23 10:23:17
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Revision: 1374
http://obi.svn.sourceforge.net/obi/?rev=1374&view=rev
Author: jamesmalone
Date: 2009-01-23 10:23:09 +0000 (Fri, 23 Jan 2009)
Log Message:
-----------
Removal of realizes some (is_concretization_of some algorithm) axiom, we don't use it and don't have any use cases pressing the need for algorithms yet. We can revisit this later if it becomes important.
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <mco...@us...> - 2009-01-23 04:25:38
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Revision: 1373
http://obi.svn.sourceforge.net/obi/?rev=1373&view=rev
Author: mcourtot
Date: 2009-01-23 04:25:27 +0000 (Fri, 23 Jan 2009)
Log Message:
-----------
added Dirk and Oliver to list of creators
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl.template
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From: <bjo...@us...> - 2009-01-23 04:07:09
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Revision: 1372
http://obi.svn.sourceforge.net/obi/?rev=1372&view=rev
Author: bjoernpeters
Date: 2009-01-23 04:07:03 +0000 (Fri, 23 Jan 2009)
Log Message:
-----------
>From PlanAndPlannedProcess call: updates to definitions of (concretized) plan and planned process.
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-01-22 23:14:01
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Revision: 1371
http://obi.svn.sourceforge.net/obi/?rev=1371&view=rev
Author: alanr
Date: 2009-01-22 23:13:56 +0000 (Thu, 22 Jan 2009)
Log Message:
-----------
change ro import to match the base in our local version
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl.template
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From: <jen...@us...> - 2009-01-22 20:31:05
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Revision: 1370
http://obi.svn.sourceforge.net/obi/?rev=1370&view=rev
Author: jenfostel
Date: 2009-01-22 20:30:51 +0000 (Thu, 22 Jan 2009)
Log Message:
-----------
cleaning up metadata for Role Branch core terms; added terms for process branch: target role' -> 'target of material addition role' and 'substance administered in vivo role' -> 'material to be added role'
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <al...@us...> - 2009-01-21 08:06:10
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Revision: 1369
http://obi.svn.sourceforge.net/obi/?rev=1369&view=rev
Author: alanr
Date: 2009-01-21 08:06:00 +0000 (Wed, 21 Jan 2009)
Log Message:
-----------
remove study design execution part of investigation. bad for performance. not good for anything obvious
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-01-20 14:35:54
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Revision: 1368
http://obi.svn.sourceforge.net/obi/?rev=1368&view=rev
Author: alanr
Date: 2009-01-20 14:35:40 +0000 (Tue, 20 Jan 2009)
Log Message:
-----------
assays don't produce specified material outputs, etc.
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-01-20 08:41:32
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Revision: 1367
http://obi.svn.sourceforge.net/obi/?rev=1367&view=rev
Author: alanr
Date: 2009-01-20 08:41:28 +0000 (Tue, 20 Jan 2009)
Log Message:
-----------
mo disjoints
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-01-20 06:54:20
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Revision: 1366
http://obi.svn.sourceforge.net/obi/?rev=1366&view=rev
Author: alanr
Date: 2009-01-20 06:54:15 +0000 (Tue, 20 Jan 2009)
Log Message:
-----------
assays, data transformations, and planning are disjoint
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-01-20 06:35:22
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Revision: 1365
http://obi.svn.sourceforge.net/obi/?rev=1365&view=rev
Author: alanr
Date: 2009-01-20 06:35:15 +0000 (Tue, 20 Jan 2009)
Log Message:
-----------
don't trigger reasoner to compute disjoints
Modified Paths:
--------------
trunk/src/tools/build/add-disjoints.lisp
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From: <mco...@us...> - 2009-01-20 01:25:37
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Revision: 1364
http://obi.svn.sourceforge.net/obi/?rev=1364&view=rev
Author: mcourtot
Date: 2009-01-20 01:25:32 +0000 (Tue, 20 Jan 2009)
Log Message:
-----------
restaured original file as fixed by pellint - wrong commit before
OBI.owl - original merge file
OBI-fixed.owl - merge file as fixed by pellint (i.e. removing defined classes)
OBI-defined.owl - merge file where I updated defined classes to have only N&S restrictions
Modified Paths:
--------------
trunk/tests/reasoning/OBI-fixed.owl
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