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From: <fgi...@us...> - 2009-01-29 11:28:34
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Revision: 1413
http://obi.svn.sourceforge.net/obi/?rev=1413&view=rev
Author: fgibson_sf
Date: 2009-01-29 11:28:24 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
changed the definition of instrument as per branch email discussion added the software relation to platform
Modified Paths:
--------------
trunk/src/ontology/branches/InstrumentAndPart.owl
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From: <jam...@us...> - 2009-01-29 11:17:19
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Revision: 1412
http://obi.svn.sourceforge.net/obi/?rev=1412&view=rev
Author: jamesmalone
Date: 2009-01-29 11:17:17 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
removal of 'normalization data transformation' class from quality into DT OWL file, this is worrying. This happened after the release in Dec when I found it in Quality.owl file (seem my commit http://obi.svn.sourceforge.net/viewvc/obi?view=rev&revision=1320 and now after release in Jan it has moved again, out of DT.owl where it belongs and this time into Quality.owl
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
trunk/src/ontology/branches/Quality.owl
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From: <jam...@us...> - 2009-01-29 10:35:28
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Revision: 1411
http://obi.svn.sourceforge.net/obi/?rev=1411&view=rev
Author: jamesmalone
Date: 2009-01-29 10:35:24 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
use case and core terms for DT
Added Paths:
-----------
trunk/docs/developer/DT/DT_core_vancouver_2009.ppt
trunk/docs/developer/DT/DT_use_case_vancouver_2009.ppt
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From: <al...@us...> - 2009-01-28 23:58:59
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Revision: 1410
http://obi.svn.sourceforge.net/obi/?rev=1410&view=rev
Author: alanr
Date: 2009-01-28 23:58:56 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
moves some obsoletes
Modified Paths:
--------------
releases/2009-01-28/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-01-28 23:57:14
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Revision: 1409
http://obi.svn.sourceforge.net/obi/?rev=1409&view=rev
Author: alanr
Date: 2009-01-28 23:57:11 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
moves from p&pp to obsolete
Modified Paths:
--------------
releases/2009-01-28/branches/Obsolete.owl
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From: <al...@us...> - 2009-01-28 23:50:01
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Revision: 1408
http://obi.svn.sourceforge.net/obi/?rev=1408&view=rev
Author: alanr
Date: 2009-01-28 23:49:58 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
remove spurious imports
Modified Paths:
--------------
trunk/src/ontology/branches/Relations.owl
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From: <al...@us...> - 2009-01-28 23:46:15
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Revision: 1407
http://obi.svn.sourceforge.net/obi/?rev=1407&view=rev
Author: alanr
Date: 2009-01-28 23:46:10 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
remove spurious imports
Modified Paths:
--------------
releases/2009-01-28/branches/Relations.owl
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From: <mco...@us...> - 2009-01-28 23:37:11
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Revision: 1406
http://obi.svn.sourceforge.net/obi/?rev=1406&view=rev
Author: mcourtot
Date: 2009-01-28 23:37:08 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
did take a bit of tweaking:
- removed disjoints under material entity
- removed non OBI assumed individuals (e.g., pato, fma, iao, go...)
- generated inferred-superclasses, look good, see the whole instrument branch being inferred under artifact object OBI_0000047 for example.
These files are committed to have a stable point - they may get updated before release.
Added Paths:
-----------
releases/2009-01-28/branches/assumed-individuals.owl
releases/2009-01-28/branches/disjoints.owl
releases/2009-01-28/branches/inferred-superclasses.owl
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From: <mco...@us...> - 2009-01-28 22:18:07
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Revision: 1405
http://obi.svn.sourceforge.net/obi/?rev=1405&view=rev
Author: mcourtot
Date: 2009-01-28 22:18:02 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
we don't add disjoints under material entity, which is now IAO_0000018 (since Melanie fobbed it off on IAO ;) )
Modified Paths:
--------------
trunk/src/tools/build/add-disjoints.lisp
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From: <mco...@us...> - 2009-01-28 19:54:36
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Revision: 1404
http://obi.svn.sourceforge.net/obi/?rev=1404&view=rev
Author: mcourtot
Date: 2009-01-28 19:54:34 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
new purls to be created: includes msi terms and purls from december 2008
Added Paths:
-----------
releases/2009-01-28/merged/list-purls.xml
releases/2009-01-28/merged/list-purls1.xml
releases/2009-01-28/merged/list-purls2.xml
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From: <mco...@us...> - 2009-01-28 19:49:24
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Revision: 1403
http://obi.svn.sourceforge.net/obi/?rev=1403&view=rev
Author: mcourtot
Date: 2009-01-28 19:49:21 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
directory for release
Added Paths:
-----------
releases/2009-01-28/merged/
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From: <mco...@us...> - 2009-01-28 19:46:10
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Revision: 1402
http://obi.svn.sourceforge.net/obi/?rev=1402&view=rev
Author: mcourtot
Date: 2009-01-28 19:46:08 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
copy files for release
Added Paths:
-----------
releases/2009-01-28/branches/
releases/2009-01-28/branches/Biomaterial.owl
releases/2009-01-28/branches/DataTransformation.owl
releases/2009-01-28/branches/DigitalEntityPlus.owl
releases/2009-01-28/branches/InstrumentAndPart.owl
releases/2009-01-28/branches/Obsolete.owl
releases/2009-01-28/branches/PlanAndPlannedProcess.owl
releases/2009-01-28/branches/Quality.owl
releases/2009-01-28/branches/Relations.owl
releases/2009-01-28/branches/Role.owl
releases/2009-01-28/build/
releases/2009-01-28/external/
Removed Paths:
-------------
releases/2009-01-28/branches/Biomaterial.owl
releases/2009-01-28/branches/DataTransformation.owl
releases/2009-01-28/branches/DigitalEntityPlus.owl
releases/2009-01-28/branches/InstrumentAndPart.owl
releases/2009-01-28/branches/Obsolete.owl
releases/2009-01-28/branches/PlanAndPlannedProcess.owl
releases/2009-01-28/branches/Quality.owl
releases/2009-01-28/branches/Relations.owl
releases/2009-01-28/branches/Role.owl
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From: <mco...@us...> - 2009-01-28 19:40:35
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Revision: 1401
http://obi.svn.sourceforge.net/obi/?rev=1401&view=rev
Author: mcourtot
Date: 2009-01-28 19:40:29 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
created release directory
Added Paths:
-----------
releases/2009-01-28/
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From: <mco...@us...> - 2009-01-28 19:37:41
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Revision: 1400
http://obi.svn.sourceforge.net/obi/?rev=1400&view=rev
Author: mcourtot
Date: 2009-01-28 19:37:37 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
updated to new ids for release
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
trunk/src/ontology/branches/DataTransformation.owl
trunk/src/ontology/branches/DigitalEntityPlus.owl
trunk/src/ontology/branches/InstrumentAndPart.owl
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
trunk/src/ontology/branches/Quality.owl
trunk/src/ontology/branches/Relations.owl
trunk/src/ontology/branches/Role.owl
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From: <al...@us...> - 2009-01-28 18:30:28
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Revision: 1399
http://obi.svn.sourceforge.net/obi/?rev=1399&view=rev
Author: alanr
Date: 2009-01-28 18:30:21 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
remove obsolete ro bfo bridges
Modified Paths:
--------------
trunk/src/ontology/external/ro.owl
Removed Paths:
-------------
trunk/src/ontology/external/ro_bfo1-1_bridge.owl
trunk/src/ontology/external/ro_bfo_bridge.owl
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From: <al...@us...> - 2009-01-28 18:28:49
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Revision: 1398
http://obi.svn.sourceforge.net/obi/?rev=1398&view=rev
Author: alanr
Date: 2009-01-28 18:28:46 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
update template to look at correct file for ro_bfo_bridge
Modified Paths:
--------------
trunk/src/ontology/branches/obi.repository.template
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From: <bjo...@us...> - 2009-01-28 18:09:40
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Revision: 1397
http://obi.svn.sourceforge.net/obi/?rev=1397&view=rev
Author: bjoernpeters
Date: 2009-01-28 18:09:37 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
Modified range/domain of has_specified_input_data etc to planned process.
Modified Paths:
--------------
trunk/src/ontology/branches/Relations.owl
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From: <bjo...@us...> - 2009-01-28 15:28:57
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Revision: 1396
http://obi.svn.sourceforge.net/obi/?rev=1396&view=rev
Author: bjoernpeters
Date: 2009-01-28 15:28:55 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
modified 'has_objective' relation to 'achieves planned objective', updated def and domain
Modified Paths:
--------------
trunk/src/ontology/branches/Relations.owl
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From: <al...@us...> - 2009-01-28 15:04:12
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Revision: 1395
http://obi.svn.sourceforge.net/obi/?rev=1395&view=rev
Author: alanr
Date: 2009-01-28 15:04:05 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
http://purl.org/obo/owl/ro_bfo1-1_bridge => http://purl.org/obo/owl/ro_bfo_bridge/1.1
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl.template
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From: <al...@us...> - 2009-01-28 02:51:54
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Revision: 1394
http://obi.svn.sourceforge.net/obi/?rev=1394&view=rev
Author: alanr
Date: 2009-01-28 02:51:48 +0000 (Wed, 28 Jan 2009)
Log Message:
-----------
realizes not subproperty of has_participant
Modified Paths:
--------------
trunk/src/ontology/branches/Relations.owl
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From: <bjo...@us...> - 2009-01-27 02:59:55
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Revision: 1393
http://obi.svn.sourceforge.net/obi/?rev=1393&view=rev
Author: bjoernpeters
Date: 2009-01-27 02:59:51 +0000 (Tue, 27 Jan 2009)
Log Message:
-----------
updated material separation and added several cell culture terms for Use Case
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <bjo...@us...> - 2009-01-27 01:29:20
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Revision: 1392
http://obi.svn.sourceforge.net/obi/?rev=1392&view=rev
Author: bjoernpeters
Date: 2009-01-27 01:29:16 +0000 (Tue, 27 Jan 2009)
Log Message:
-----------
merged 'objective driven process' with 'planned process', as discussed in last PPP calls (1/22/09).
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-01-26 18:22:55
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Revision: 1391
http://obi.svn.sourceforge.net/obi/?rev=1391&view=rev
Author: alanr
Date: 2009-01-26 18:22:45 +0000 (Mon, 26 Jan 2009)
Log Message:
-----------
bug in disjoints computation for placeholders
Modified Paths:
--------------
trunk/src/tools/build/add-disjoints.lisp
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From: <jen...@us...> - 2009-01-26 16:20:49
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Revision: 1390
http://obi.svn.sourceforge.net/obi/?rev=1390&view=rev
Author: jenfostel
Date: 2009-01-26 16:20:46 +0000 (Mon, 26 Jan 2009)
Log Message:
-----------
working on manufacturer role -- some changes made previously were lost
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <al...@us...> - 2009-01-26 11:02:59
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Revision: 1389
http://obi.svn.sourceforge.net/obi/?rev=1389&view=rev
Author: alanr
Date: 2009-01-26 11:02:53 +0000 (Mon, 26 Jan 2009)
Log Message:
-----------
removed axiom has_part some (assay or 'data transformation') per discussion on protocol application mailing list
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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