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From: <bjo...@us...> - 2009-02-01 20:42:12
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Revision: 1438
http://obi.svn.sourceforge.net/obi/?rev=1438&view=rev
Author: bjoernpeters
Date: 2009-02-01 20:42:06 +0000 (Sun, 01 Feb 2009)
Log Message:
-----------
added 'creating mixture ...' process. Updated some objectives with the new 'achieves objective' relation.
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2009-02-01 18:26:46
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Revision: 1437
http://obi.svn.sourceforge.net/obi/?rev=1437&view=rev
Author: mcourtot
Date: 2009-02-01 18:26:40 +0000 (Sun, 01 Feb 2009)
Log Message:
-----------
added editor notes explaining:
- why enzyme doesn't classify under material entity
- interaction with envo
- position on fetus and parasites on macroscopic part of multicellular organism
Modified Paths:
--------------
trunk/src/ontology/branches/Biomaterial.owl
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From: <mco...@us...> - 2009-01-30 23:22:09
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Revision: 1435
http://obi.svn.sourceforge.net/obi/?rev=1435&view=rev
Author: mcourtot
Date: 2009-01-30 22:26:50 +0000 (Fri, 30 Jan 2009)
Log Message:
-----------
removed extra annotation properties
corrected ro-bfo import
Modified Paths:
--------------
releases/2009-01-28/merged/OBI.owl
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From: <mco...@us...> - 2009-01-30 22:49:54
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Revision: 1436
http://obi.svn.sourceforge.net/obi/?rev=1436&view=rev
Author: mcourtot
Date: 2009-01-30 22:32:08 +0000 (Fri, 30 Jan 2009)
Log Message:
-----------
...protege removed my XML comments...
Modified Paths:
--------------
releases/2009-01-28/merged/OBI.owl
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From: <mco...@us...> - 2009-01-30 21:27:22
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Revision: 1434
http://obi.svn.sourceforge.net/obi/?rev=1434&view=rev
Author: mcourtot
Date: 2009-01-30 21:27:16 +0000 (Fri, 30 Jan 2009)
Log Message:
-----------
the release :)
Added Paths:
-----------
releases/2009-01-28/merged/OBI.owl
releases/2009-01-28/merged/OBI.pprj
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From: <mco...@us...> - 2009-01-30 20:38:54
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Revision: 1433
http://obi.svn.sourceforge.net/obi/?rev=1433&view=rev
Author: mcourtot
Date: 2009-01-30 20:38:43 +0000 (Fri, 30 Jan 2009)
Log Message:
-----------
- updated OBIL.owl to the short version of IAO import (cf protege trouble to import ontology-metadata from iao otherwise)
- added OBID.owl (OBIL + disjoints)
- added OBIDI.owl (OBID + individuals)
- added OBI-nocomments (pre-release version, just need XML comments plugged in, consistency and OWL-DL checked)
Modified Paths:
--------------
releases/2009-01-28/merged/pre-release/OBIL.owl
Added Paths:
-----------
releases/2009-01-28/merged/pre-release/OBI-nocomments.owl
releases/2009-01-28/merged/pre-release/OBID.owl
releases/2009-01-28/merged/pre-release/OBIDI.owl
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From: <jen...@us...> - 2009-01-30 17:32:01
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Revision: 1432
http://obi.svn.sourceforge.net/obi/?rev=1432&view=rev
Author: jenfostel
Date: 2009-01-30 17:31:59 +0000 (Fri, 30 Jan 2009)
Log Message:
-----------
fixed misplaced IRB role
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <jam...@us...> - 2009-01-30 09:26:10
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Revision: 1431
http://obi.svn.sourceforge.net/obi/?rev=1431&view=rev
Author: jamesmalone
Date: 2009-01-30 09:26:07 +0000 (Fri, 30 Jan 2009)
Log Message:
-----------
update to slide 8
Modified Paths:
--------------
trunk/docs/developer/DT/DT_core_vancouver_2009.ppt
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From: <al...@us...> - 2009-01-30 03:04:51
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Revision: 1430
http://obi.svn.sourceforge.net/obi/?rev=1430&view=rev
Author: alanr
Date: 2009-01-30 03:04:42 +0000 (Fri, 30 Jan 2009)
Log Message:
-----------
repair missing label for molecular concentration
Modified Paths:
--------------
releases/2009-01-28/branches/Quality.owl
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From: <al...@us...> - 2009-01-30 02:50:23
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Revision: 1429
http://obi.svn.sourceforge.net/obi/?rev=1429&view=rev
Author: alanr
Date: 2009-01-30 02:50:19 +0000 (Fri, 30 Jan 2009)
Log Message:
-----------
Add some disjoints
<owl:Class rdf:about="http://purl.obofoundry.org/obo/OBI_0600014"> <!-- material separation -->
<owl:disjointWith rdf:resource="http://purl.obofoundry.org/obo/OBI_0000274"/> <!-- adding a material entity into a target -->
<owl:disjointWith rdf:resource="http://purl.obofoundry.org/obo/OBI_0200000"/> <!-- data transformation -->
</owl:Class>
<owl:Class rdf:about="http://purl.obofoundry.org/obo/OBI_0000094"> <!-- artifact material creation -->
<owl:disjointWith rdf:resource="http://purl.obofoundry.org/obo/OBI_0200000"/> <!-- data transformation -->
<owl:disjointWith rdf:resource="http://purl.obofoundry.org/obo/OBI_0000274"/> <!-- adding a material entity into a target -->
</owl:Class>
Modified Paths:
--------------
releases/2009-01-28/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-01-30 02:48:59
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Revision: 1428
http://obi.svn.sourceforge.net/obi/?rev=1428&view=rev
Author: alanr
Date: 2009-01-30 02:48:52 +0000 (Fri, 30 Jan 2009)
Log Message:
-----------
data transformation has no specified input or output and doesn't utilize reagent
Modified Paths:
--------------
releases/2009-01-28/branches/DataTransformation.owl
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From: <mco...@us...> - 2009-01-30 00:09:46
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Revision: 1427
http://obi.svn.sourceforge.net/obi/?rev=1427&view=rev
Author: mcourtot
Date: 2009-01-30 00:09:42 +0000 (Fri, 30 Jan 2009)
Log Message:
-----------
added direct import of the 2009-01-23 ontology metadata owl file - import doesn't seem to be followed by Protege
Modified Paths:
--------------
releases/2009-01-28/merged/pre-release/OBIL.owl
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From: <mco...@us...> - 2009-01-29 22:47:13
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Revision: 1422
http://obi.svn.sourceforge.net/obi/?rev=1422&view=rev
Author: mcourtot
Date: 2009-01-29 21:57:20 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
keep disjoints under material entity, but not instruments
Modified Paths:
--------------
trunk/src/tools/build/add-disjoints.lisp
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From: <mco...@us...> - 2009-01-29 22:46:44
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Revision: 1424
http://obi.svn.sourceforge.net/obi/?rev=1424&view=rev
Author: mcourtot
Date: 2009-01-29 22:15:12 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
added missing quotes
Modified Paths:
--------------
releases/2009-01-28/branches/assumed-individuals.owl
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From: <mco...@us...> - 2009-01-29 22:46:26
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Revision: 1425
http://obi.svn.sourceforge.net/obi/?rev=1425&view=rev
Author: mcourtot
Date: 2009-01-29 22:20:25 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
directory for OBIL.owl, OBID.owl and OBIDI.owl merged files
Added Paths:
-----------
releases/2009-01-28/merged/pre-release/
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From: <mco...@us...> - 2009-01-29 22:46:04
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Revision: 1423
http://obi.svn.sourceforge.net/obi/?rev=1423&view=rev
Author: mcourtot
Date: 2009-01-29 21:59:19 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
added disjoints under material entity - they are not causing trouble
Modified Paths:
--------------
releases/2009-01-28/branches/disjoints.owl
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From: <mco...@us...> - 2009-01-29 22:45:45
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Revision: 1426
http://obi.svn.sourceforge.net/obi/?rev=1426&view=rev
Author: mcourtot
Date: 2009-01-29 22:26:02 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
basic obi merge file - no disjoints, no individuals, no inferred superclasses
Added Paths:
-----------
releases/2009-01-28/merged/pre-release/OBIL.owl
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From: <jen...@us...> - 2009-01-29 21:25:18
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Revision: 1421
http://obi.svn.sourceforge.net/obi/?rev=1421&view=rev
Author: jenfostel
Date: 2009-01-29 21:25:12 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
re-added definitions for regulatory roles and worker roles
Modified Paths:
--------------
trunk/src/ontology/branches/Role.owl
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From: <mco...@us...> - 2009-01-29 20:33:03
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Revision: 1420
http://obi.svn.sourceforge.net/obi/?rev=1420&view=rev
Author: mcourtot
Date: 2009-01-29 20:33:02 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
restaured restriction output of normalization DT to normalized data set
Modified Paths:
--------------
trunk/src/ontology/branches/Quality.owl
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From: <al...@us...> - 2009-01-29 19:59:15
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Revision: 1419
http://obi.svn.sourceforge.net/obi/?rev=1419&view=rev
Author: alanr
Date: 2009-01-29 19:59:12 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
remove obsolete reference has_specified_output some genotype from genotyping.
Added
realizes some (is_concretization_of some ('plan specification'
and has_part some 'sequence feature identification objective'))
Modified Paths:
--------------
releases/2009-01-28/branches/PlanAndPlannedProcess.owl
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From: <al...@us...> - 2009-01-29 19:49:04
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Revision: 1418
http://obi.svn.sourceforge.net/obi/?rev=1418&view=rev
Author: alanr
Date: 2009-01-29 19:49:01 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
replace use of obsolete http://purl.obofoundry.org/obo/OBI_0100027 with http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239
Modified Paths:
--------------
releases/2009-01-28/branches/PlanAndPlannedProcess.owl
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From: <mco...@us...> - 2009-01-29 19:45:34
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Revision: 1417
http://obi.svn.sourceforge.net/obi/?rev=1417&view=rev
Author: mcourtot
Date: 2009-01-29 19:45:31 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
delete template for pc users - normal template works fine under windows as well
Removed Paths:
-------------
trunk/src/ontology/branches/obi.repository.template.pc
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From: <bjo...@us...> - 2009-01-29 18:35:45
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Revision: 1416
http://obi.svn.sourceforge.net/obi/?rev=1416&view=rev
Author: bjoernpeters
Date: 2009-01-29 18:35:40 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
PPPB call. Re-worked material separation objective and sub-objectives. Removed asserted subclasses, and added objectives to them.
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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From: <jam...@us...> - 2009-01-29 17:08:27
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Revision: 1415
http://obi.svn.sourceforge.net/obi/?rev=1415&view=rev
Author: jamesmalone
Date: 2009-01-29 17:08:24 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
added achieves_planned_objective restriction to data transformation class - classifies under planned process now
Modified Paths:
--------------
trunk/src/ontology/branches/DataTransformation.owl
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From: <jam...@us...> - 2009-01-29 12:13:11
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Revision: 1414
http://obi.svn.sourceforge.net/obi/?rev=1414&view=rev
Author: jamesmalone
Date: 2009-01-29 11:37:50 +0000 (Thu, 29 Jan 2009)
Log Message:
-----------
correct error correction DT objective typo
Modified Paths:
--------------
trunk/src/ontology/branches/PlanAndPlannedProcess.owl
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