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From: <p_a...@us...> - 2009-10-26 03:45:08
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Revision: 767
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=767&view=rev
Author: p_ansell
Date: 2009-10-26 03:45:00 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
fix manual refresh page
Modified Paths:
--------------
trunk/src/war/manualrefresh.jsp
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From: <p_a...@us...> - 2009-10-26 03:41:16
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Revision: 766
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=766&view=rev
Author: p_ansell
Date: 2009-10-26 03:41:09 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
fix bug with final variable
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
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From: <p_a...@us...> - 2009-10-26 03:38:57
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Revision: 765
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=765&view=rev
Author: p_ansell
Date: 2009-10-26 03:38:51 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
add blacklist expiry to the manual configuration refresh and standardise the copyright statement on the functional JSP files
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/bio2rdfpipes.jsp
trunk/src/war/blacklisterror.jsp
trunk/src/war/debug-configuration.jsp
trunk/src/war/error-sesame-output.jsp
trunk/src/war/error-tomcat-encoded-slashes.jsp
trunk/src/war/errorstats.jsp
trunk/src/war/internalschema.jsp
trunk/src/war/manualrefresh.jsp
trunk/src/war/namespaceproviders.jsp
trunk/src/war/profiles.jsp
trunk/src/war/redirectToId.jsp
trunk/src/war/test-regexmethods.jsp
trunk/src/war/test-template-use.jsp
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From: <p_a...@us...> - 2009-10-26 03:13:53
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Revision: 764
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=764&view=rev
Author: p_ansell
Date: 2009-10-26 03:13:46 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
get endpoint blacklist ignoring working properly, and reduce the number of errors from 20 to 10 so that bad endpoints are removed faster unless they have a 1 in 10 success rate
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-10-26 01:36:12
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Revision: 763
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=763&view=rev
Author: p_ansell
Date: 2009-10-26 01:36:01 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
make the predicate show up for each subject, even if it was the same predicate as previously, not doing this sometimes creates a confusing table when there are multiple resources for a page and some of the predicates overlap
Modified Paths:
--------------
trunk/src/war/WEB-INF/templates/proptable.vm
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From: <p_a...@us...> - 2009-10-26 01:33:20
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Revision: 762
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=762&view=rev
Author: p_ansell
Date: 2009-10-26 01:33:14 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
make very sure that the catchall query is explicitly excluded by each known profile to go with its implicit exclusion inside the definition
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
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From: <p_a...@us...> - 2009-10-26 01:19:06
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Revision: 761
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=761&view=rev
Author: p_ansell
Date: 2009-10-26 01:18:55 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
hide the debugging messages, but leave them in the HTML file behind the scenes
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/templates/page.vm
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From: <p_a...@us...> - 2009-10-26 01:10:41
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Revision: 760
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=760&view=rev
Author: p_ansell
Date: 2009-10-26 01:10:26 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
lock the basic profile down a bit more so there is no ambiguity as to whether it uses other queries or providers, but it can still use as many rdfrules as are eventually defined for the matching providers
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
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From: <p_a...@us...> - 2009-10-26 01:08:52
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Revision: 759
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=759&view=rev
Author: p_ansell
Date: 2009-10-26 01:08:42 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
catch all query working and provider set to exclude by default so it doesn't get included unless it is requested
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-10-26 00:59:11
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Revision: 758
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=758&view=rev
Author: p_ansell
Date: 2009-10-26 00:59:01 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
fis provider inclusion of query
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
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From: <p_a...@us...> - 2009-10-26 00:48:47
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Revision: 757
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=757&view=rev
Author: p_ansell
Date: 2009-10-26 00:48:41 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
straighten out a few things, and add a new default profile for web users that selects between the public mirrors and doesn't perform SPARQL queries directly
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/debug-configuration.jsp
trunk/src/war/namespaceproviders.jsp
trunk/src/war/profiles.jsp
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From: <p_a...@us...> - 2009-10-25 22:00:47
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Revision: 756
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=756&view=rev
Author: p_ansell
Date: 2009-10-25 22:00:37 +0000 (Sun, 25 Oct 2009)
Log Message:
-----------
updates
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/carleton-configuration.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
trunk/src/war/debug-configuration.jsp
trunk/src/war/internalschema.jsp
trunk/src/war/multifetch.jsp
trunk/src/war/serverstats.jsp
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From: <p_a...@us...> - 2009-10-16 05:10:25
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Revision: 755
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=755&view=rev
Author: p_ansell
Date: 2009-10-16 05:10:14 +0000 (Fri, 16 Oct 2009)
Log Message:
-----------
make the edit and show pages store and retrieve and redirect between each other
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/HttpUrlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProvenanceRecord.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/internalschema.jsp
trunk/src/war/multifetch.jsp
trunk/src/war/secured/configurationeditor/edit.jsp
Added Paths:
-----------
trunk/src/war/secured/configurationeditor/show.jsp
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From: <p_a...@us...> - 2009-10-07 01:51:56
|
Revision: 754
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=754&view=rev
Author: p_ansell
Date: 2009-10-07 01:51:50 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
fix up internalschema.jsp page
Modified Paths:
--------------
trunk/src/war/atlas2rdf.jsp
trunk/src/war/internalschema.jsp
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From: <p_a...@us...> - 2009-10-07 01:34:45
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Revision: 753
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=753&view=rev
Author: p_ansell
Date: 2009-10-07 01:34:26 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
add modelVersion to each of the toRdf and schemaToRdf methods to enable smooth upgrading between versions
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Profile.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Project.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProvenanceRecord.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RuleTest.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Template.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/queryall/RdfCompatible.java
trunk/src/war/secured/configurationeditor/edit.jsp
trunk/src/war/secured/configurationeditor/index.jsp
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From: <p_a...@us...> - 2009-10-06 00:18:09
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Revision: 752
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=752&view=rev
Author: p_ansell
Date: 2009-10-06 00:17:33 +0000 (Tue, 06 Oct 2009)
Log Message:
-----------
rename file to something matching its functionality
Added Paths:
-----------
trunk/src/war/secured/configurationeditor/edit.jsp
Removed Paths:
-------------
trunk/src/war/secured/configurationeditor/create_new.jsp
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From: <p_a...@us...> - 2009-10-05 10:24:05
|
Revision: 751
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=751&view=rev
Author: p_ansell
Date: 2009-10-05 10:23:58 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
more fixes
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
trunk/src/war/multifetch.jsp
trunk/src/war/secured/configurationeditor/create_new.jsp
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From: <p_a...@us...> - 2009-10-05 03:01:59
|
Revision: 750
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=750&view=rev
Author: p_ansell
Date: 2009-10-05 03:01:47 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
make provenance and config editor retrieval work
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/templates/page.vm
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/secured/configurationeditor/create_new.jsp
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From: <p_a...@us...> - 2009-10-05 02:26:18
|
Revision: 749
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=749&view=rev
Author: p_ansell
Date: 2009-10-05 02:26:10 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
change mquter storage port
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-10-05 01:50:46
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Revision: 748
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=748&view=rev
Author: p_ansell
Date: 2009-10-05 01:50:38 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
fix provenance namespace in configuration file
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-10-05 01:48:56
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Revision: 747
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=747&view=rev
Author: p_ansell
Date: 2009-10-05 01:48:50 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
fix graph name for provenance in configuration file
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-10-05 01:48:13
|
Revision: 746
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=746&view=rev
Author: p_ansell
Date: 2009-10-05 01:48:07 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
config editor inserts new custom queries and the relevant provenance
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/ProvenanceRecord.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/secured/configurationeditor/create_new.jsp
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From: <p_a...@us...> - 2009-10-01 07:47:49
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Revision: 745
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=745&view=rev
Author: p_ansell
Date: 2009-10-01 07:47:43 +0000 (Thu, 01 Oct 2009)
Log Message:
-----------
add elementtype support and some basic provenance support to go further towards supporting provenance in the configuration editor
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Profile.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Project.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProvenanceRecord.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RuleTest.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Template.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/src/org/queryall/RdfCompatible.java
trunk/src/war/atlas2rdf.jsp
trunk/src/war/secured/configurationeditor/create_new.jsp
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From: <p_a...@us...> - 2009-09-29 01:22:21
|
Revision: 743
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=743&view=rev
Author: p_ansell
Date: 2009-09-29 00:21:16 +0000 (Tue, 29 Sep 2009)
Log Message:
-----------
do some abstraction to enable common functionalities to be accessed via interfaces
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/internalschema.jsp
trunk/src/war/secured/configurationeditor/create_new.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/queryall/
trunk/src/war/WEB-INF/src/org/queryall/RdfCompatible.java
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From: <p_a...@us...> - 2009-09-29 00:52:17
|
Revision: 744
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=744&view=rev
Author: p_ansell
Date: 2009-09-29 00:23:27 +0000 (Tue, 29 Sep 2009)
Log Message:
-----------
get it compiling again
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
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