bio2rdf-svncommits Mailing List for bio2rdf (Page 11)
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From: <p_a...@us...> - 2009-09-27 22:21:02
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Revision: 742
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=742&view=rev
Author: p_ansell
Date: 2009-09-27 22:20:55 +0000 (Sun, 27 Sep 2009)
Log Message:
-----------
add maxrows parameter to SPARQL queries
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/HttpUrlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
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From: <p_a...@us...> - 2009-09-23 22:48:49
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Revision: 741
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=741&view=rev
Author: p_ansell
Date: 2009-09-23 22:48:38 +0000 (Wed, 23 Sep 2009)
Log Message:
-----------
remove 0.5 branch
Removed Paths:
-------------
branches/0.5/
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From: <p_a...@us...> - 2009-09-21 01:42:31
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Revision: 740
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=740&view=rev
Author: p_ansell
Date: 2009-09-21 01:42:22 +0000 (Mon, 21 Sep 2009)
Log Message:
-----------
change over to not using all endpoints for every provider by default
Modified Paths:
--------------
trunk/build.xml
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From: <p_a...@us...> - 2009-09-21 01:36:41
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Revision: 739
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=739&view=rev
Author: p_ansell
Date: 2009-09-21 01:36:27 +0000 (Mon, 21 Sep 2009)
Log Message:
-----------
add a basic ProvenanceRecord class for use with the editor, and add backup configuration support to avoid huge issues when a server that contains the most up to date configuration goes down. revert to using local files if possible in that case
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
trunk/src/war/secured/configurationeditor/create_new.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/bio2rdf/ProvenanceRecord.java
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From: <p_a...@us...> - 2009-09-16 05:34:30
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Revision: 738
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=738&view=rev
Author: p_ansell
Date: 2009-09-16 05:34:17 +0000 (Wed, 16 Sep 2009)
Log Message:
-----------
enable arbitrary multiple queries that match the /multipleQUERY/namespace1:identifier1/namespace2:identifier2/etc. notation without having to hardcode them
Modified Paths:
--------------
trunk/src/war/multifetch.jsp
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From: <p_a...@us...> - 2009-09-16 05:26:40
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Revision: 737
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=737&view=rev
Author: p_ansell
Date: 2009-09-16 05:26:32 +0000 (Wed, 16 Sep 2009)
Log Message:
-----------
add queryplan for multiple, so the queryplans for each item are combined where possible into a single file to optimise the amount that is passed down the line
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/multifetch.jsp
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From: <p_a...@us...> - 2009-09-14 23:56:24
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Revision: 736
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=736&view=rev
Author: p_ansell
Date: 2009-09-14 23:56:10 +0000 (Mon, 14 Sep 2009)
Log Message:
-----------
fix up the URI being displayed on the multifetch.jsp HTML output
Modified Paths:
--------------
trunk/src/war/multifetch.jsp
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From: <p_a...@us...> - 2009-09-14 22:39:53
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Revision: 735
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=735&view=rev
Author: p_ansell
Date: 2009-09-14 22:39:46 +0000 (Mon, 14 Sep 2009)
Log Message:
-----------
add http://samwald.info/res/dbpedia_mesh_mapping.ttl as a source for dbpedia and mesh
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-09-14 00:49:44
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Revision: 734
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=734&view=rev
Author: p_ansell
Date: 2009-09-14 00:49:39 +0000 (Mon, 14 Sep 2009)
Log Message:
-----------
change logging levels and try to clean up urlrewrite.xml a little
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2009-09-13 11:12:55
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Revision: 733
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=733&view=rev
Author: p_ansell
Date: 2009-09-13 11:12:47 +0000 (Sun, 13 Sep 2009)
Log Message:
-----------
turn down logging levels
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2009-09-13 11:09:25
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Revision: 732
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=732&view=rev
Author: p_ansell
Date: 2009-09-13 11:09:08 +0000 (Sun, 13 Sep 2009)
Log Message:
-----------
fix up multifetch functionality again
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/atlas2rdf.jsp
trunk/src/war/multifetch.jsp
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From: <p_a...@us...> - 2009-09-13 06:31:57
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Revision: 731
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=731&view=rev
Author: p_ansell
Date: 2009-09-13 06:31:50 +0000 (Sun, 13 Sep 2009)
Log Message:
-----------
add reverse construct for hssp on uniprot
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-09-13 06:30:05
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Revision: 730
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=730&view=rev
Author: p_ansell
Date: 2009-09-13 06:29:57 +0000 (Sun, 13 Sep 2009)
Log Message:
-----------
add forward construct for hssp on uniprot.bio2rdf.org/sparql
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-09-13 06:19:33
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Revision: 729
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=729&view=rev
Author: p_ansell
Date: 2009-09-13 06:19:24 +0000 (Sun, 13 Sep 2009)
Log Message:
-----------
fix references that were broken by the replacements
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-09-13 03:00:19
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Revision: 728
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=728&view=rev
Author: p_ansell
Date: 2009-09-13 03:00:11 +0000 (Sun, 13 Sep 2009)
Log Message:
-----------
reduce logging levels for deployment to bio2rdf.mquter.qut.edu.au
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2009-09-13 02:44:30
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Revision: 727
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=727&view=rev
Author: p_ansell
Date: 2009-09-13 02:44:23 +0000 (Sun, 13 Sep 2009)
Log Message:
-----------
readd the old /ns/CONFIGNAMESPACE:* functionality
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/debug-configuration.jsp
trunk/src/war/internalschema.jsp
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From: <p_a...@us...> - 2009-09-13 02:24:30
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Revision: 726
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=726&view=rev
Author: p_ansell
Date: 2009-09-13 02:24:21 +0000 (Sun, 13 Sep 2009)
Log Message:
-----------
make configuration page fail if the requested API version is greater than the current supported version, in future any deprecated api versions will also be blacklisted using this mechanism so there is recognisable failure
Modified Paths:
--------------
trunk/src/war/debug-configuration.jsp
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From: <p_a...@us...> - 2009-09-13 02:09:15
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Revision: 725
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=725&view=rev
Author: p_ansell
Date: 2009-09-13 02:09:06 +0000 (Sun, 13 Sep 2009)
Log Message:
-----------
change over configuration API from 1 to 2 as part of changing http://bio2rdf.org/ns/CONFIGNAMESPACE* to http://purl.org/queryall/CONFIGNAMESPACE*
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-ruletests-config.n3
trunk/src/war/WEB-INF/carleton-configuration.n3
trunk/src/war/WEB-INF/my-local-configuration-example.n3
trunk/src/war/WEB-INF/sharednames-configuration.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/test-configuration.n3
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/debug-configuration.jsp
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From: <p_a...@us...> - 2009-09-13 00:41:22
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Revision: 724
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=724&view=rev
Author: p_ansell
Date: 2009-09-13 00:41:14 +0000 (Sun, 13 Sep 2009)
Log Message:
-----------
move PROJECT_HOME_URL to build.xml file to allow replacement of it easily
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-09-13 00:26:48
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Revision: 723
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=723&view=rev
Author: p_ansell
Date: 2009-09-13 00:26:43 +0000 (Sun, 13 Sep 2009)
Log Message:
-----------
add sharednames config as sample use of software to create a non-Bio2RDF resolver
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/carleton-configuration.n3
trunk/src/war/WEB-INF/src/log4j.properties
Added Paths:
-----------
trunk/src/war/WEB-INF/sharednames-configuration.n3
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From: <p_a...@us...> - 2009-09-11 02:52:25
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Revision: 722
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=722&view=rev
Author: p_ansell
Date: 2009-09-11 02:52:18 +0000 (Fri, 11 Sep 2009)
Log Message:
-----------
reduce logging levels
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2009-09-11 02:44:37
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Revision: 721
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=721&view=rev
Author: p_ansell
Date: 2009-09-11 02:44:24 +0000 (Fri, 11 Sep 2009)
Log Message:
-----------
remove the use of nonpaged queries for pageoffset's other than the default 1
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-09-07 23:39:00
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Revision: 720
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=720&view=rev
Author: p_ansell
Date: 2009-09-07 23:38:53 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
add svn Id
Modified Paths:
--------------
trunk/src/war/WEB-INF/carleton-configuration.n3
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From: <p_a...@us...> - 2009-09-07 23:38:27
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Revision: 719
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=719&view=rev
Author: p_ansell
Date: 2009-09-07 23:38:12 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
add carleton configuration file
Added Paths:
-----------
trunk/src/war/WEB-INF/carleton-configuration.n3
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From: <p_a...@us...> - 2009-09-07 05:31:20
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Revision: 718
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=718&view=rev
Author: p_ansell
Date: 2009-09-07 05:31:05 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
add some notes about how to put image links in specially from HTML (assuming current conventions about namespaces and identifiers)
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
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