bio2rdf-svncommits Mailing List for bio2rdf (Page 13)
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From: <p_a...@us...> - 2009-08-27 00:46:58
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Revision: 692
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=692&view=rev
Author: p_ansell
Date: 2009-08-27 00:46:49 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
add first go at outputting RDFa
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/templates/header.vm
trunk/src/war/WEB-INF/templates/proptable.vm
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-08-26 23:09:31
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Revision: 691
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=691&view=rev
Author: p_ansell
Date: 2009-08-26 23:09:25 +0000 (Wed, 26 Aug 2009)
Log Message:
-----------
add intranamespacelinksns support, and in the process provide a shortcut for getting the namespace and identifier as two separate strings if needed
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/templates/header.vm
trunk/src/war/WEB-INF/templates/page.vm
trunk/src/war/WEB-INF/templates/proptable.vm
trunk/src/war/includes-css/html_page_styles.css
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From: <p_a...@us...> - 2009-08-25 03:23:53
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Revision: 690
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=690&view=rev
Author: p_ansell
Date: 2009-08-25 03:23:46 +0000 (Tue, 25 Aug 2009)
Log Message:
-----------
make non-MQUTER profile build targets use the mquter RDF configuration
Modified Paths:
--------------
trunk/build.xml
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From: <p_a...@us...> - 2009-08-25 03:21:54
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Revision: 689
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=689&view=rev
Author: p_ansell
Date: 2009-08-25 03:21:48 +0000 (Tue, 25 Aug 2009)
Log Message:
-----------
reduce logging levels for release
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2009-08-25 02:10:17
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Revision: 688
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=688&view=rev
Author: p_ansell
Date: 2009-08-25 02:10:08 +0000 (Tue, 25 Aug 2009)
Log Message:
-----------
since the templates have been backed out, this is really a 0.7.3 release to address the non ROOT webapp context issues that were reported
Modified Paths:
--------------
trunk/build.xml
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From: <p_a...@us...> - 2009-08-24 07:06:41
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Revision: 687
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=687&view=rev
Author: p_ansell
Date: 2009-08-24 07:06:29 +0000 (Mon, 24 Aug 2009)
Log Message:
-----------
reverse changes to CustomQuery so that it is configurable whether we are trying out the Templates or not during development period for this feature
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/internalschema.jsp
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From: <p_a...@us...> - 2009-08-21 04:54:14
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Revision: 686
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=686&view=rev
Author: p_ansell
Date: 2009-08-21 04:54:08 +0000 (Fri, 21 Aug 2009)
Log Message:
-----------
more patches to make the contextpath work
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/templates/header.vm
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From: <p_a...@us...> - 2009-08-21 01:13:00
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Revision: 685
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=685&view=rev
Author: p_ansell
Date: 2009-08-21 01:12:53 +0000 (Fri, 21 Aug 2009)
Log Message:
-----------
fixes for trunk svn, more playing with templates to get them to work as desired
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/atlas2rdf.jsp
trunk/src/war/debug-configuration.jsp
trunk/src/war/index.html
trunk/src/war/test-template-use.jsp
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From: <p_a...@us...> - 2009-08-16 04:04:04
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Revision: 684
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=684&view=rev
Author: p_ansell
Date: 2009-08-16 04:03:58 +0000 (Sun, 16 Aug 2009)
Log Message:
-----------
make Templates export to RDF
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Template.java
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From: <p_a...@us...> - 2009-08-16 03:19:14
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Revision: 683
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=683&view=rev
Author: p_ansell
Date: 2009-08-16 03:19:07 +0000 (Sun, 16 Aug 2009)
Log Message:
-----------
more work on getting templates integrated, including on the RDF config dump and the custom query RDF export
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Template.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/debug-configuration.jsp
trunk/src/war/test-template-use.jsp
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From: <p_a...@us...> - 2009-08-15 08:49:57
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Revision: 682
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=682&view=rev
Author: p_ansell
Date: 2009-08-15 08:49:38 +0000 (Sat, 15 Aug 2009)
Log Message:
-----------
large changes aimed at making the templating system extensible with direct integration into the native functions in specified ways
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/templates/page.vm
trunk/src/war/atlas2rdf.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/bio2rdf/Template.java
trunk/src/war/test-template-use.jsp
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From: <p_a...@us...> - 2009-08-13 02:37:54
|
Revision: 681
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=681&view=rev
Author: p_ansell
Date: 2009-08-13 02:37:46 +0000 (Thu, 13 Aug 2009)
Log Message:
-----------
add another link
Modified Paths:
--------------
trunk/src/war/demo.rdf
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From: <p_a...@us...> - 2009-08-13 02:12:27
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Revision: 680
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=680&view=rev
Author: p_ansell
Date: 2009-08-13 02:12:21 +0000 (Thu, 13 Aug 2009)
Log Message:
-----------
make changes to queries and providers and add some more URI's to demonstrate links to LODD sets on the demo
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/demo.rdf
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From: <p_a...@us...> - 2009-08-13 00:33:34
|
Revision: 679
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=679&view=rev
Author: p_ansell
Date: 2009-08-13 00:33:14 +0000 (Thu, 13 Aug 2009)
Log Message:
-----------
add two more unsafe queries for linksns and linkstonamespace queries so that they can be used with the DBpedia pagelinks collection
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/templates/header.vm
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From: <p_a...@us...> - 2009-08-12 23:47:17
|
Revision: 678
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=678&view=rev
Author: p_ansell
Date: 2009-08-12 23:47:06 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
add statistics schema information
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/internalschema.jsp
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From: <p_a...@us...> - 2009-08-12 07:46:02
|
Revision: 677
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=677&view=rev
Author: p_ansell
Date: 2009-08-12 07:45:55 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
avoid including an Eclipse created directory
Modified Paths:
--------------
trunk/build.xml
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From: <p_a...@us...> - 2009-08-12 07:33:04
|
Revision: 676
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=676&view=rev
Author: p_ansell
Date: 2009-08-12 07:32:58 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
fix issue with pageoffset not being applied correctly to endpoint URL's
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
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From: <p_a...@us...> - 2009-08-12 07:08:13
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Revision: 675
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=675&view=rev
Author: p_ansell
Date: 2009-08-12 07:08:05 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
tag 0.7.1 version
Modified Paths:
--------------
tags/0.7.1/src/war/xsl-sources/geneid.xsl~
Added Paths:
-----------
tags/0.7.1/
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From: <p_a...@us...> - 2009-08-12 05:53:33
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Revision: 674
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=674&view=rev
Author: p_ansell
Date: 2009-08-12 05:53:21 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
add extra statistics that are useful for disambiguating between the types of clients, ie, accept header and the actual content type that was sent back
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
trunk/src/war/atlas2rdf.jsp
trunk/src/war/serverstats.jsp
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From: <p_a...@us...> - 2009-08-12 05:09:32
|
Revision: 673
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=673&view=rev
Author: p_ansell
Date: 2009-08-12 05:09:24 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
add malfunctioning bot to the list of blocked user agents
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-08-12 04:51:06
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Revision: 672
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=672&view=rev
Author: p_ansell
Date: 2009-08-12 04:51:00 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
bump version for release and update serverstats page and configuration and reduce the logging levels to decent values
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/debug-configuration.jsp
trunk/src/war/serverstats.jsp
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From: <p_a...@us...> - 2009-08-12 04:21:43
|
Revision: 671
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=671&view=rev
Author: p_ansell
Date: 2009-08-12 04:21:35 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
fix bug where the collection was supposed to be ordered, but wasn't being given implemented as a List
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/VoidUtility.java
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From: <p_a...@us...> - 2009-08-12 04:12:27
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Revision: 670
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=670&view=rev
Author: p_ansell
Date: 2009-08-12 04:12:20 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
add some more optimisations
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/blacklisterror.jsp
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From: <p_a...@us...> - 2009-08-12 03:24:38
|
Revision: 669
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=669&view=rev
Author: p_ansell
Date: 2009-08-12 03:24:32 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
more migration from List/ArrayList to Collection/HashSet where the collection does not need to be ordered or randomly accessible
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/ContentTypeNegotiator.java
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/MediaRangeSpec.java
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Profile.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Project.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryDebug.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RuleTest.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/atlas2rdf.jsp
trunk/src/war/debug-configuration.jsp
trunk/src/war/errorstats.jsp
trunk/src/war/multifetch.jsp
trunk/src/war/namespaceproviders.jsp
trunk/src/war/serverstats.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/basicrdffile.n3
trunk/src/war/WEB-INF/void-example.n3
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From: <p_a...@us...> - 2009-08-12 00:21:46
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Revision: 668
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=668&view=rev
Author: p_ansell
Date: 2009-08-12 00:21:40 +0000 (Wed, 12 Aug 2009)
Log Message:
-----------
performance improvements facilitated by using Collection where possible and only using List where order is important
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
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