bio2rdf-svncommits Mailing List for bio2rdf (Page 12)
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From: <p_a...@us...> - 2009-09-07 05:02:47
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Revision: 717
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=717&view=rev
Author: p_ansell
Date: 2009-09-07 05:02:41 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
add namespace editing to the configuration editor in a skeleton form
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/secured/configurationeditor/create_new.jsp
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From: <p_a...@us...> - 2009-09-07 02:41:24
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Revision: 716
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=716&view=rev
Author: p_ansell
Date: 2009-09-07 02:41:16 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
fix output labels
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
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From: <p_a...@us...> - 2009-09-07 02:37:09
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Revision: 715
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=715&view=rev
Author: p_ansell
Date: 2009-09-07 02:37:02 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
fix bug with inRobotsTxt
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
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From: <p_a...@us...> - 2009-09-07 02:17:52
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Revision: 714
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=714&view=rev
Author: p_ansell
Date: 2009-09-07 02:17:46 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
query creation in the configuration editor is working in principle, no saving yet
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/secured/configurationeditor/create_new.jsp
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From: <p_a...@us...> - 2009-09-07 01:24:27
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Revision: 713
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=713&view=rev
Author: p_ansell
Date: 2009-09-07 01:24:17 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
add the use all endpoints for provider into the build.xml file so people know it is something they have to decide about
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/secured/configurationeditor/create_new.jsp
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From: <p_a...@us...> - 2009-09-07 00:34:32
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Revision: 712
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=712&view=rev
Author: p_ansell
Date: 2009-09-07 00:34:14 +0000 (Mon, 07 Sep 2009)
Log Message:
-----------
fix the implicit include system so that it doesn't implicitly include resources that are excluded by default. anything excluded by default must be explicitly included before it will be utilised now
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/test-configuration.n3
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From: <p_a...@us...> - 2009-09-06 22:25:26
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Revision: 711
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=711&view=rev
Author: p_ansell
Date: 2009-09-06 22:25:17 +0000 (Sun, 06 Sep 2009)
Log Message:
-----------
delete duplicate provider definition
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-09-06 22:10:33
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Revision: 710
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=710&view=rev
Author: p_ansell
Date: 2009-09-06 22:10:27 +0000 (Sun, 06 Sep 2009)
Log Message:
-----------
add more pdb providers for fasta and data and change current data to xml
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-09-06 20:56:43
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Revision: 709
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=709&view=rev
Author: p_ansell
Date: 2009-09-06 20:56:35 +0000 (Sun, 06 Sep 2009)
Log Message:
-----------
fix pdb html provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2009-09-06 01:22:20
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Revision: 707
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=707&view=rev
Author: p_ansell
Date: 2009-09-06 00:44:08 +0000 (Sun, 06 Sep 2009)
Log Message:
-----------
add profiles debug page
Added Paths:
-----------
trunk/src/war/profiles.jsp
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From: <p_a...@us...> - 2009-09-06 00:53:43
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Revision: 708
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=708&view=rev
Author: p_ansell
Date: 2009-09-06 00:53:37 +0000 (Sun, 06 Sep 2009)
Log Message:
-----------
add some more predicates for images and HTML links based on the myexp_ontology* URI's
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-09-05 09:02:41
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Revision: 706
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=706&view=rev
Author: p_ansell
Date: 2009-09-05 09:02:35 +0000 (Sat, 05 Sep 2009)
Log Message:
-----------
remove the visual debugging information again
Modified Paths:
--------------
trunk/src/war/WEB-INF/templates/page.vm
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From: <p_a...@us...> - 2009-09-05 08:58:19
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Revision: 705
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=705&view=rev
Author: p_ansell
Date: 2009-09-05 08:58:13 +0000 (Sat, 05 Sep 2009)
Log Message:
-----------
fix pubchem inchi support
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
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From: <p_a...@us...> - 2009-09-05 08:28:50
|
Revision: 704
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=704&view=rev
Author: p_ansell
Date: 2009-09-05 08:28:44 +0000 (Sat, 05 Sep 2009)
Log Message:
-----------
add nmrshiftdb providers and queries and namespaces and rdfrules
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/templates/page.vm
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From: <p_a...@us...> - 2009-09-04 05:26:51
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Revision: 703
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=703&view=rev
Author: p_ansell
Date: 2009-09-04 05:26:45 +0000 (Fri, 04 Sep 2009)
Log Message:
-----------
add http://www.w3.org/2004/02/skos/core#prefLabel to the list of known label/title URI's
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-09-04 05:20:45
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Revision: 702
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=702&view=rev
Author: p_ansell
Date: 2009-09-04 05:20:38 +0000 (Fri, 04 Sep 2009)
Log Message:
-----------
fix logging level
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2009-09-04 05:10:00
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Revision: 701
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=701&view=rev
Author: p_ansell
Date: 2009-09-04 05:09:53 +0000 (Fri, 04 Sep 2009)
Log Message:
-----------
add fasta provider for pdb
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
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From: <p_a...@us...> - 2009-09-04 05:02:11
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Revision: 700
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=700&view=rev
Author: p_ansell
Date: 2009-09-04 05:02:00 +0000 (Fri, 04 Sep 2009)
Log Message:
-----------
add some more settings so that images and comments show up and make the removal list slightly more generic
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/templates/page.vm
trunk/src/war/atlas2rdf.jsp
trunk/src/war/debug-configuration.jsp
trunk/src/war/includes-css/html_page_styles.css
trunk/src/war/namespaceproviders.jsp
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From: <p_a...@us...> - 2009-09-04 03:07:59
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Revision: 699
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=699&view=rev
Author: p_ansell
Date: 2009-09-04 03:07:49 +0000 (Fri, 04 Sep 2009)
Log Message:
-----------
add support for hardcoded hostname and contextpath so that users can use reverse proxies with both the default ROOT webapp and other webapps, non-reverse proxies are not affected by this change
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-08-31 08:29:28
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Revision: 698
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=698&view=rev
Author: p_ansell
Date: 2009-08-31 08:29:08 +0000 (Mon, 31 Aug 2009)
Log Message:
-----------
update the testcase with the appropriate method, as the sesame OpenRDF URI class is not XML compliant by design as it implements a unique method of URI splitting to obtain two strings, but not necessarily ones that fit any given specification
Modified Paths:
--------------
trunk/src/war/error-sesame-output.jsp
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From: <p_a...@us...> - 2009-08-31 02:01:12
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Revision: 697
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=697&view=rev
Author: p_ansell
Date: 2009-08-31 02:01:05 +0000 (Mon, 31 Aug 2009)
Log Message:
-----------
add test case for critical URI related sesame bug before it can be used as an NCName/QName generator on its own http://www.openrdf.org/issues/browse/SES-680
Modified Paths:
--------------
trunk/src/war/error-sesame-output.jsp
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From: <p_a...@us...> - 2009-08-31 00:09:46
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Revision: 696
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=696&view=rev
Author: p_ansell
Date: 2009-08-31 00:09:40 +0000 (Mon, 31 Aug 2009)
Log Message:
-----------
make debugstrings work with HTML representation
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/atlas2rdf.jsp
trunk/src/war/debug-configuration.jsp
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From: <p_a...@us...> - 2009-08-30 22:09:50
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Revision: 695
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=695&view=rev
Author: p_ansell
Date: 2009-08-30 22:09:43 +0000 (Sun, 30 Aug 2009)
Log Message:
-----------
found it was a new browser extension that was mucking up the XML rendering, so redo cleanup
Modified Paths:
--------------
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-08-27 02:45:28
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Revision: 694
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=694&view=rev
Author: p_ansell
Date: 2009-08-27 02:45:20 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
redo the original place where the XML header is put in
Modified Paths:
--------------
trunk/src/war/WEB-INF/templates/header.vm
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-08-27 01:04:42
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Revision: 693
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=693&view=rev
Author: p_ansell
Date: 2009-08-27 01:04:33 +0000 (Thu, 27 Aug 2009)
Log Message:
-----------
minor fixes
Modified Paths:
--------------
trunk/src/war/WEB-INF/templates/header.vm
trunk/src/war/WEB-INF/templates/proptable.vm
trunk/src/war/atlas2rdf.jsp
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