bio2rdf-svncommits Mailing List for bio2rdf (Page 25)
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From: <p_a...@us...> - 2009-05-07 00:39:50
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Revision: 392
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=392&view=rev
Author: p_ansell
Date: 2009-05-07 00:39:41 +0000 (Thu, 07 May 2009)
Log Message:
-----------
fix bug caused by content type containing encoding value
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherUriQueryRunnable.java
trunk/src/war/atlas2rdf.jsp
trunk/src/war/error-sesame-output.jsp
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From: <p_a...@us...> - 2009-05-06 23:58:25
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Revision: 391
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=391&view=rev
Author: p_ansell
Date: 2009-05-06 23:58:11 +0000 (Wed, 06 May 2009)
Log Message:
-----------
add some more minor improvements to try to get it working
Modified Paths:
--------------
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-06 23:53:00
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Revision: 390
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=390&view=rev
Author: p_ansell
Date: 2009-05-06 23:52:50 +0000 (Wed, 06 May 2009)
Log Message:
-----------
add content negotiation to the fetcher and add text/rdf+n3 as an alternative to application/rdf+xml to atlas2rdf.jsp
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/ContentTypeNegotiator.java
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/MediaRangeSpec.java
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherUriQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-05 10:12:20
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Revision: 389
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=389&view=rev
Author: p_ansell
Date: 2009-05-05 10:12:05 +0000 (Tue, 05 May 2009)
Log Message:
-----------
remove tags by default as well
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-05 10:11:11
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Revision: 388
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=388&view=rev
Author: p_ansell
Date: 2009-05-05 10:11:02 +0000 (Tue, 05 May 2009)
Log Message:
-----------
removemost automatic insertions so the data that comes back is almost the same number of distinct triples that are found in databases, keep the automatic sameAs to link back to the native database URI's if they are different from the standardised Bio2RDF URI's
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-05 10:02:27
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Revision: 387
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=387&view=rev
Author: p_ansell
Date: 2009-05-05 10:02:19 +0000 (Tue, 05 May 2009)
Log Message:
-----------
add another myexperiment namespace
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-05 09:55:51
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Revision: 386
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=386&view=rev
Author: p_ansell
Date: 2009-05-05 09:55:39 +0000 (Tue, 05 May 2009)
Log Message:
-----------
add another myexperiment namespace and rdf normalisation rule
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-05 06:33:26
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Revision: 385
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=385&view=rev
Author: p_ansell
Date: 2009-05-05 06:33:17 +0000 (Tue, 05 May 2009)
Log Message:
-----------
add missing content negotiator class
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/bio2rdf/Bio2RdfContentNegotiator.java
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From: <p_a...@us...> - 2009-05-05 06:32:41
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Revision: 384
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=384&view=rev
Author: p_ansell
Date: 2009-05-05 06:32:32 +0000 (Tue, 05 May 2009)
Log Message:
-----------
add some content negotiation in, not sure how well it works so far but it still requests
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/MediaRangeSpec.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherUriQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
trunk/src/war/jsp-bio2rdf/crossref-openurldoi2rdf.jsp
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From: <p_a...@us...> - 2009-05-05 03:48:44
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Revision: 383
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=383&view=rev
Author: p_ansell
Date: 2009-05-05 03:48:21 +0000 (Tue, 05 May 2009)
Log Message:
-----------
add content negotiation libraries from pubby http://dbpedia.svn.sourceforge.net/viewvc/dbpedia/pubby/src/de/fuberlin/wiwiss/pubby/negotiation/
Added Paths:
-----------
trunk/src/war/WEB-INF/src/de/
trunk/src/war/WEB-INF/src/de/fuberlin/
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/ContentTypeNegotiator.java
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/MediaRangeSpec.java
trunk/src/war/error-tomcat-encoded-slashes.jsp
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From: <p_a...@us...> - 2009-05-05 03:15:29
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Revision: 382
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=382&view=rev
Author: p_ansell
Date: 2009-05-05 03:15:21 +0000 (Tue, 05 May 2009)
Log Message:
-----------
multifetch enhancements, add Settings.PREFERRED_CONTENT_TYPE, and fix /demo that was broken when the urlrewrite library upgrade occured
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
trunk/src/war/multifetch.jsp
trunk/src/war/robots.txt
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From: <p_a...@us...> - 2009-05-02 08:55:59
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Revision: 381
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=381&view=rev
Author: p_ansell
Date: 2009-05-02 08:55:37 +0000 (Sat, 02 May 2009)
Log Message:
-----------
add commonuris operation
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/bio2rdfpipes.jsp
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From: <p_a...@us...> - 2009-05-02 08:36:28
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Revision: 380
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=380&view=rev
Author: p_ansell
Date: 2009-05-02 08:36:27 +0000 (Sat, 02 May 2009)
Log Message:
-----------
fix URL encoding issue by requiring double urlencoded parameters, ie, % becomes %25, which doesn't trigger the buggy Tomcat or Apache urlunencoding issues
Modified Paths:
--------------
trunk/src/war/WEB-INF/lib/urlrewrite-3.2.0.jar
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/WEB-INF/web-production-template.xml
trunk/src/war/bio2rdfpipes.jsp
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From: <p_a...@us...> - 2009-05-01 09:41:40
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Revision: 379
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=379&view=rev
Author: p_ansell
Date: 2009-05-01 09:41:31 +0000 (Fri, 01 May 2009)
Log Message:
-----------
upgrade urlrewrite in attempt to fix issue with something consistently unencoding slashes before they get to the server and hence making HTTP GET calls to pipes completely unfunctional if they have to contain urlencoded URL's
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/bio2rdfpipes.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/lib/urlrewrite-3.2.0.jar
Removed Paths:
-------------
trunk/src/war/WEB-INF/lib/urlrewrite-3.1.0.jar
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From: <p_a...@us...> - 2009-05-01 07:52:10
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Revision: 378
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=378&view=rev
Author: p_ansell
Date: 2009-05-01 07:52:08 +0000 (Fri, 01 May 2009)
Log Message:
-----------
add new pipes
Added Paths:
-----------
trunk/src/war/WEB-INF/src/bio2rdf_all_partial_common_uris.pipe
trunk/src/war/WEB-INF/src/bio2rdf_basic_from_multiple_uri.pipe
trunk/src/war/WEB-INF/src/bio2rdf_linkstonamespace_from_multiple_helper.pipe
trunk/src/war/WEB-INF/src/bio2rdf_multiple_by_namespace.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ncbigi.pipe
trunk/src/war/WEB-INF/src/bio2rdf_partial_common_uris_by_namespace.pipe
trunk/src/war/WEB-INF/src/bio2rdf_transform_uri_rdfxml_linkstonamespace_style.pipe
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From: <p_a...@us...> - 2009-05-01 05:24:59
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Revision: 377
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=377&view=rev
Author: p_ansell
Date: 2009-05-01 05:24:43 +0000 (Fri, 01 May 2009)
Log Message:
-----------
add pir forward and reverse construct provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-01 05:14:40
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Revision: 376
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=376&view=rev
Author: p_ansell
Date: 2009-05-01 05:14:26 +0000 (Fri, 01 May 2009)
Log Message:
-----------
finalise the /queryplan/ implementation
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-01 01:21:14
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Revision: 375
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=375&view=rev
Author: p_ansell
Date: 2009-05-01 01:21:04 +0000 (Fri, 01 May 2009)
Log Message:
-----------
make sane keys up for the query bundles
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-01 00:58:04
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Revision: 374
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=374&view=rev
Author: p_ansell
Date: 2009-05-01 00:57:55 +0000 (Fri, 01 May 2009)
Log Message:
-----------
get queryplan working, just have to figure out the URI to show for each member of the query plan
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-04-30 23:20:53
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Revision: 373
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=373&view=rev
Author: p_ansell
Date: 2009-04-30 23:20:47 +0000 (Thu, 30 Apr 2009)
Log Message:
-----------
add initial urlrewrite support for /queryplan/
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-04-30 23:01:57
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Revision: 372
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=372&view=rev
Author: p_ansell
Date: 2009-04-30 23:01:55 +0000 (Thu, 30 Apr 2009)
Log Message:
-----------
fix searchns/ns/searchterm as it didn't seem appropriate to have a single case where ns:something wasn't ns:id
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/demo.rdf
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From: <p_a...@us...> - 2009-04-30 18:39:15
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Revision: 371
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=371&view=rev
Author: p_ansell
Date: 2009-04-30 18:39:09 +0000 (Thu, 30 Apr 2009)
Log Message:
-----------
fix rule order configuration bug so that taxonomy now resolves again
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/debug-configuration.jsp
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From: <p_a...@us...> - 2009-04-28 10:31:35
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Revision: 370
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=370&view=rev
Author: p_ansell
Date: 2009-04-28 10:31:22 +0000 (Tue, 28 Apr 2009)
Log Message:
-----------
implement rule sorting and get most of myexperiment done
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-28 08:34:51
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Revision: 369
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=369&view=rev
Author: p_ansell
Date: 2009-04-28 08:34:46 +0000 (Tue, 28 Apr 2009)
Log Message:
-----------
take out the www rules from the construct provider, unless needed should leave the original WWW url visible
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-28 07:34:54
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Revision: 368
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=368&view=rev
Author: p_ansell
Date: 2009-04-28 07:34:51 +0000 (Tue, 28 Apr 2009)
Log Message:
-----------
add namespaces to myexperiment provider so the current list resolves
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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