bio2rdf-svncommits Mailing List for bio2rdf (Page 24)
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From: <p_a...@us...> - 2009-05-08 05:08:35
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Revision: 417
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=417&view=rev
Author: p_ansell
Date: 2009-05-08 05:08:27 +0000 (Fri, 08 May 2009)
Log Message:
-----------
add missing content type return value for unknown queries
Modified Paths:
--------------
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-08 04:31:36
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Revision: 416
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=416&view=rev
Author: p_ansell
Date: 2009-05-08 04:31:31 +0000 (Fri, 08 May 2009)
Log Message:
-----------
bump build number per its current stability
Modified Paths:
--------------
trunk/build.xml
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From: <p_a...@us...> - 2009-05-08 04:29:17
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Revision: 415
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=415&view=rev
Author: p_ansell
Date: 2009-05-08 04:29:16 +0000 (Fri, 08 May 2009)
Log Message:
-----------
fix encoding issue with smiles
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-08 04:20:36
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Revision: 414
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=414&view=rev
Author: p_ansell
Date: 2009-05-08 04:20:34 +0000 (Fri, 08 May 2009)
Log Message:
-----------
add iupac as reverseconstruct namespace for dbpedia
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-08 04:18:05
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Revision: 413
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=413&view=rev
Author: p_ansell
Date: 2009-05-08 04:18:01 +0000 (Fri, 08 May 2009)
Log Message:
-----------
small change to kegg rdfising search
Modified Paths:
--------------
trunk/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
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From: <p_a...@us...> - 2009-05-08 04:11:17
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Revision: 412
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=412&view=rev
Author: p_ansell
Date: 2009-05-08 04:11:16 +0000 (Fri, 08 May 2009)
Log Message:
-----------
add uniref and uniparc back in
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-08 03:20:30
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Revision: 411
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=411&view=rev
Author: p_ansell
Date: 2009-05-08 03:20:21 +0000 (Fri, 08 May 2009)
Log Message:
-----------
add unknown query response with type error
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-08 03:02:28
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Revision: 410
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=410&view=rev
Author: p_ansell
Date: 2009-05-08 03:02:15 +0000 (Fri, 08 May 2009)
Log Message:
-----------
add more providers in, and cleanup some pages
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/blacklisterror.jsp
trunk/src/war/demo.rdf
trunk/src/war/errorstats.jsp
trunk/src/war/index.html
trunk/src/war/mquter-index.html
trunk/src/war/namespaceproviders.jsp
trunk/src/war/quebec-index.html
trunk/src/war/robots.txt
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From: <p_a...@us...> - 2009-05-07 12:03:19
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Revision: 409
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=409&view=rev
Author: p_ansell
Date: 2009-05-07 12:03:10 +0000 (Thu, 07 May 2009)
Log Message:
-----------
add dnsonly query for users who want performance with a decrease in the amount of data that is accessible
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-07 11:36:23
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Revision: 408
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=408&view=rev
Author: p_ansell
Date: 2009-05-07 11:36:19 +0000 (Thu, 07 May 2009)
Log Message:
-----------
fix taglabels being called for everything, and include a new static query to identify when a namespace is unknown
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-07 07:45:45
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Revision: 407
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=407&view=rev
Author: p_ansell
Date: 2009-05-07 07:45:38 +0000 (Thu, 07 May 2009)
Log Message:
-----------
another try at making tag labels not be called all the time
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-07 07:36:28
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Revision: 406
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=406&view=rev
Author: p_ansell
Date: 2009-05-07 07:36:27 +0000 (Thu, 07 May 2009)
Log Message:
-----------
make taglabels query only used on a few known namespaces, tags will still work for all, but for efficiency, reduce the number that are used with taglabels for construct type queries
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-07 06:41:25
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Revision: 405
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=405&view=rev
Author: p_ansell
Date: 2009-05-07 06:41:19 +0000 (Thu, 07 May 2009)
Log Message:
-----------
make refseq more useful by putting a reverse construct on ecocyc
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-07 06:38:18
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Revision: 404
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=404&view=rev
Author: p_ansell
Date: 2009-05-07 06:38:11 +0000 (Thu, 07 May 2009)
Log Message:
-----------
make ecocyc more useful using reverse constructs for the unrdfised namespaces linked to from ecocyc
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-07 06:27:37
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Revision: 403
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=403&view=rev
Author: p_ansell
Date: 2009-05-07 06:27:36 +0000 (Thu, 07 May 2009)
Log Message:
-----------
fix searchns/uniprot/searchterm so it doesn't use the live rdfising form
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
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From: <p_a...@us...> - 2009-05-07 06:18:23
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Revision: 402
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=402&view=rev
Author: p_ansell
Date: 2009-05-07 06:18:22 +0000 (Thu, 07 May 2009)
Log Message:
-----------
commit a few more rules for Bio2RDF interconversion with geospecies
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-07 05:48:21
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Revision: 401
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=401&view=rev
Author: p_ansell
Date: 2009-05-07 05:48:20 +0000 (Thu, 07 May 2009)
Log Message:
-----------
add geospecies, including fix so that endpointspecific elements are replaced on the endpoint URL template, as they are directly relevant to geospecies where we are just performing HTTP GET's
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-07 04:14:13
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Revision: 400
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=400&view=rev
Author: p_ansell
Date: 2009-05-07 04:14:04 +0000 (Thu, 07 May 2009)
Log Message:
-----------
update configuration
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-07 03:20:14
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Revision: 399
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=399&view=rev
Author: p_ansell
Date: 2009-05-07 03:20:11 +0000 (Thu, 07 May 2009)
Log Message:
-----------
add reverseconstruct that utilises dc:identifier predicates that have objects in the "namespace:identifier" format, initially to support reverse construct for doi using the uniprot citations database
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-07 03:09:27
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Revision: 398
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=398&view=rev
Author: p_ansell
Date: 2009-05-07 03:09:15 +0000 (Thu, 07 May 2009)
Log Message:
-----------
take out some long time hacks to fix bad data that sat in endpoints for large amounts of time, but now should be visible as it should be replaced
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-07 02:57:16
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Revision: 397
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=397&view=rev
Author: p_ansell
Date: 2009-05-07 02:57:08 +0000 (Thu, 07 May 2009)
Log Message:
-----------
update robots.txt
Modified Paths:
--------------
trunk/src/war/robots.txt
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From: <p_a...@us...> - 2009-05-07 02:22:41
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Revision: 395
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=395&view=rev
Author: p_ansell
Date: 2009-05-07 01:44:47 +0000 (Thu, 07 May 2009)
Log Message:
-----------
add content negotiation to debug-configuration.jsp
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/debug-configuration.jsp
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From: <p_a...@us...> - 2009-05-07 02:17:19
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Revision: 396
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=396&view=rev
Author: p_ansell
Date: 2009-05-07 02:17:16 +0000 (Thu, 07 May 2009)
Log Message:
-----------
bump version to 0.5_beta1
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/atlas2rdf.jsp
trunk/src/war/debug-configuration.jsp
trunk/src/war/multifetch.jsp
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From: <p_a...@us...> - 2009-05-07 00:59:02
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Revision: 394
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=394&view=rev
Author: p_ansell
Date: 2009-05-07 00:58:54 +0000 (Thu, 07 May 2009)
Log Message:
-----------
fix syntax bug in multifetch
Modified Paths:
--------------
trunk/src/war/multifetch.jsp
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From: <p_a...@us...> - 2009-05-07 00:50:25
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Revision: 393
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=393&view=rev
Author: p_ansell
Date: 2009-05-07 00:50:13 +0000 (Thu, 07 May 2009)
Log Message:
-----------
fix multifetch to use content negotiation too
Modified Paths:
--------------
trunk/src/war/atlas2rdf.jsp
trunk/src/war/multifetch.jsp
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