bio2rdf-svncommits Mailing List for bio2rdf (Page 23)
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From: <p_a...@us...> - 2009-05-17 04:48:19
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Revision: 442
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=442&view=rev
Author: p_ansell
Date: 2009-05-17 04:48:07 +0000 (Sun, 17 May 2009)
Log Message:
-----------
add more translation rules based on the HCLS DERI OBO 2 DBPEDIA links to make them useful for reverse construct for the relevant bio2rdf namespaces
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 04:42:53
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Revision: 441
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=441&view=rev
Author: p_ansell
Date: 2009-05-17 04:42:45 +0000 (Sun, 17 May 2009)
Log Message:
-----------
add miro namespace normalisation rule
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 04:41:27
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Revision: 440
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=440&view=rev
Author: p_ansell
Date: 2009-05-17 04:41:19 +0000 (Sun, 17 May 2009)
Log Message:
-----------
add more obo translation rules
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 04:29:54
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Revision: 439
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=439&view=rev
Author: p_ansell
Date: 2009-05-17 04:29:46 +0000 (Sun, 17 May 2009)
Log Message:
-----------
change iHop URL from a resource URI to a literal
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 04:18:36
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Revision: 438
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=438&view=rev
Author: p_ansell
Date: 2009-05-17 04:18:28 +0000 (Sun, 17 May 2009)
Log Message:
-----------
add capability to remove trivial ?myUri owl:sameAs ?myUri triples that are automagically inserted by the static RDF input code, but are not really advantageous to users because they are trivial
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-17 03:52:10
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Revision: 437
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=437&view=rev
Author: p_ansell
Date: 2009-05-17 03:52:02 +0000 (Sun, 17 May 2009)
Log Message:
-----------
add fix for one of the silly __file: namespaces in relation to the OBI descriptions
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 03:13:42
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Revision: 436
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=436&view=rev
Author: p_ansell
Date: 2009-05-17 03:13:34 +0000 (Sun, 17 May 2009)
Log Message:
-----------
remove munging of dbpedia property predicate URI's
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 03:11:43
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Revision: 435
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=435&view=rev
Author: p_ansell
Date: 2009-05-17 03:11:33 +0000 (Sun, 17 May 2009)
Log Message:
-----------
add dbpedia reverse construct provider for OBO ontologies
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-13 00:36:49
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Revision: 434
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=434&view=rev
Author: p_ansell
Date: 2009-05-13 00:36:36 +0000 (Wed, 13 May 2009)
Log Message:
-----------
add hubmed provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-11 22:45:33
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Revision: 433
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=433&view=rev
Author: p_ansell
Date: 2009-05-11 22:45:26 +0000 (Mon, 11 May 2009)
Log Message:
-----------
fix unists html provider, as it was previously attached to data, and add log.isinfoenabled wrapper in contenttypenegotiator for efficiency
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/ContentTypeNegotiator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-11 06:05:05
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Revision: 432
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=432&view=rev
Author: p_ansell
Date: 2009-05-11 06:04:54 +0000 (Mon, 11 May 2009)
Log Message:
-----------
add script used to generate the namespace lists based on the SPARQL tab-separated output
Added Paths:
-----------
trunk/src/util/python/getnamespacelistfromsparqloutput.py
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From: <p_a...@us...> - 2009-05-11 05:13:52
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Revision: 431
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=431&view=rev
Author: p_ansell
Date: 2009-05-11 05:13:42 +0000 (Mon, 11 May 2009)
Log Message:
-----------
add more namespaces
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-11 05:07:02
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Revision: 430
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=430&view=rev
Author: p_ansell
Date: 2009-05-11 05:06:50 +0000 (Mon, 11 May 2009)
Log Message:
-----------
add reactome reverse construct namespaces
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-11 05:02:34
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Revision: 429
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=429&view=rev
Author: p_ansell
Date: 2009-05-11 05:02:20 +0000 (Mon, 11 May 2009)
Log Message:
-----------
modify reverse construct list for geneid
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-11 04:57:19
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Revision: 428
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=428&view=rev
Author: p_ansell
Date: 2009-05-11 04:57:10 +0000 (Mon, 11 May 2009)
Log Message:
-----------
add kegg namespaces
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-11 04:53:08
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Revision: 427
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=427&view=rev
Author: p_ansell
Date: 2009-05-11 04:52:59 +0000 (Mon, 11 May 2009)
Log Message:
-----------
add more reverse construct providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-11 04:48:13
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Revision: 426
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=426&view=rev
Author: p_ansell
Date: 2009-05-11 04:48:04 +0000 (Mon, 11 May 2009)
Log Message:
-----------
add reverse construct go namespaces
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-11 04:41:27
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Revision: 425
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=425&view=rev
Author: p_ansell
Date: 2009-05-11 04:41:18 +0000 (Mon, 11 May 2009)
Log Message:
-----------
add cpath reverse construct namespaces
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-11 04:37:50
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Revision: 424
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=424&view=rev
Author: p_ansell
Date: 2009-05-11 04:37:40 +0000 (Mon, 11 May 2009)
Log Message:
-----------
add chebi extra namespaces
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-11 04:35:28
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Revision: 423
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=423&view=rev
Author: p_ansell
Date: 2009-05-11 04:35:11 +0000 (Mon, 11 May 2009)
Log Message:
-----------
add some more namespaces
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-10 23:58:52
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Revision: 422
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=422&view=rev
Author: p_ansell
Date: 2009-05-10 23:58:48 +0000 (Sun, 10 May 2009)
Log Message:
-----------
add some checks into the pubby negotiation code to try to fix the sogou bot "Accept: " blank value header which causes pubby to throw exceptions and add sogou to robots.txt for the current time unless they fix their headers
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/ContentTypeNegotiator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Bio2RdfContentNegotiator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/robots.txt
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From: <p_a...@us...> - 2009-05-08 10:38:42
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Revision: 421
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=421&view=rev
Author: p_ansell
Date: 2009-05-08 10:38:40 +0000 (Fri, 08 May 2009)
Log Message:
-----------
fix handling of silly agents who send "Accept: " and it is interpreted as null, which then screws up the pubby content negotiation code
Modified Paths:
--------------
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-08 08:02:07
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Revision: 420
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=420&view=rev
Author: p_ansell
Date: 2009-05-08 08:02:06 +0000 (Fri, 08 May 2009)
Log Message:
-----------
minor fix to URL
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-08 08:01:14
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Revision: 419
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=419&view=rev
Author: p_ansell
Date: 2009-05-08 08:01:13 +0000 (Fri, 08 May 2009)
Log Message:
-----------
add bioguid handle resolver
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-08 05:13:00
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Revision: 418
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=418&view=rev
Author: p_ansell
Date: 2009-05-08 05:12:54 +0000 (Fri, 08 May 2009)
Log Message:
-----------
tag 0.5.0 release
Added Paths:
-----------
tags/0.5.0/
tags/0.5.0/build.xml
tags/0.5.0/src/war/WEB-INF/src/log4j.properties
tags/0.5.0/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
tags/0.5.0/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
tags/0.5.0/src/war/WEB-INF/src/org/bio2rdf/Settings.java
tags/0.5.0/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
tags/0.5.0/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
tags/0.5.0/src/war/WEB-INF/urlrewrite.xml
tags/0.5.0/src/war/atlas2rdf.jsp
tags/0.5.0/src/war/blacklisterror.jsp
tags/0.5.0/src/war/debug-configuration.jsp
tags/0.5.0/src/war/demo.rdf
tags/0.5.0/src/war/errorstats.jsp
tags/0.5.0/src/war/index.html
tags/0.5.0/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
tags/0.5.0/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
tags/0.5.0/src/war/mquter-index.html
tags/0.5.0/src/war/multifetch.jsp
tags/0.5.0/src/war/namespaceproviders.jsp
tags/0.5.0/src/war/quebec-index.html
tags/0.5.0/src/war/robots.txt
Removed Paths:
-------------
tags/0.5.0/build.xml
tags/0.5.0/src/war/WEB-INF/src/log4j.properties
tags/0.5.0/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
tags/0.5.0/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
tags/0.5.0/src/war/WEB-INF/src/org/bio2rdf/Settings.java
tags/0.5.0/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
tags/0.5.0/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
tags/0.5.0/src/war/WEB-INF/urlrewrite.xml
tags/0.5.0/src/war/atlas2rdf.jsp
tags/0.5.0/src/war/blacklisterror.jsp
tags/0.5.0/src/war/debug-configuration.jsp
tags/0.5.0/src/war/demo.rdf
tags/0.5.0/src/war/errorstats.jsp
tags/0.5.0/src/war/index.html
tags/0.5.0/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
tags/0.5.0/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
tags/0.5.0/src/war/mquter-index.html
tags/0.5.0/src/war/multifetch.jsp
tags/0.5.0/src/war/namespaceproviders.jsp
tags/0.5.0/src/war/quebec-index.html
tags/0.5.0/src/war/robots.txt
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