bio2rdf-svncommits Mailing List for bio2rdf (Page 22)
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From: <p_a...@us...> - 2009-05-22 07:44:26
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Revision: 467
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=467&view=rev
Author: p_ansell
Date: 2009-05-22 07:44:18 +0000 (Fri, 22 May 2009)
Log Message:
-----------
add reverse construct so that textual mesh terms are linked to their DNNNNNN terms
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-22 07:31:41
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Revision: 466
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=466&view=rev
Author: p_ansell
Date: 2009-05-22 07:31:32 +0000 (Fri, 22 May 2009)
Log Message:
-----------
fix gene_expression_database at MGI looking URI's and fix mesh since the endpoint has been recreated with normalised URI's
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2009-05-20 01:04:02
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Revision: 465
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=465&view=rev
Author: p_ansell
Date: 2009-05-20 01:03:39 +0000 (Wed, 20 May 2009)
Log Message:
-----------
change predicate for xml to xmlUrl
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-20 00:54:29
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Revision: 464
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=464&view=rev
Author: p_ansell
Date: 2009-05-20 00:54:20 +0000 (Wed, 20 May 2009)
Log Message:
-----------
add blocks to robots.txt and new pubmedcentral service to query types
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/robots.txt
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From: <p_a...@us...> - 2009-05-20 00:54:09
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Revision: 462
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=462&view=rev
Author: p_ansell
Date: 2009-05-20 00:32:40 +0000 (Wed, 20 May 2009)
Log Message:
-----------
fix hubmed and log levels
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-20 00:54:09
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Revision: 463
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=463&view=rev
Author: p_ansell
Date: 2009-05-20 00:43:16 +0000 (Wed, 20 May 2009)
Log Message:
-----------
add more pubmed query type extensions
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-19 04:58:20
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Revision: 461
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=461&view=rev
Author: p_ansell
Date: 2009-05-19 04:58:09 +0000 (Tue, 19 May 2009)
Log Message:
-----------
bump version number for 0.5.1 release
Modified Paths:
--------------
trunk/build.xml
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From: <p_a...@us...> - 2009-05-19 02:13:10
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Revision: 460
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=460&view=rev
Author: p_ansell
Date: 2009-05-19 02:13:04 +0000 (Tue, 19 May 2009)
Log Message:
-----------
add new namespace provider for genomereviews
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/error-sesame-output.jsp
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From: <p_a...@us...> - 2009-05-19 02:02:50
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Revision: 459
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=459&view=rev
Author: p_ansell
Date: 2009-05-19 01:40:41 +0000 (Tue, 19 May 2009)
Log Message:
-----------
undo some changes, things work on qut.bio2rdf.org so maybe it is just an issue of the servers default encoding and locale
Modified Paths:
--------------
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-18 11:43:23
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Revision: 458
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=458&view=rev
Author: p_ansell
Date: 2009-05-18 11:43:22 +0000 (Mon, 18 May 2009)
Log Message:
-----------
attempt to solve the UTF-8 encoding issue that appears only to be applicable to application/rdf+xml and only on atlas2rdf.jsp, as error-sesame-output.jsp doesn't display the issue
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
trunk/src/war/error-sesame-output.jsp
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From: <p_a...@us...> - 2009-05-18 09:35:53
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Revision: 457
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=457&view=rev
Author: p_ansell
Date: 2009-05-18 09:35:45 +0000 (Mon, 18 May 2009)
Log Message:
-----------
undo changes as dictybase_ref is a legitimate namespace
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2009-05-18 09:33:53
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Revision: 456
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=456&view=rev
Author: p_ansell
Date: 2009-05-18 09:33:52 +0000 (Mon, 18 May 2009)
Log Message:
-----------
add rewrite to standardise the dictybase namespace and have a backup resolution for any stray referenes to dictybase_ref
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2009-05-18 09:12:10
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Revision: 455
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=455&view=rev
Author: p_ansell
Date: 2009-05-18 09:12:08 +0000 (Mon, 18 May 2009)
Log Message:
-----------
add more rdf rules and namespaces for tcm
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-18 09:05:07
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Revision: 454
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=454&view=rev
Author: p_ansell
Date: 2009-05-18 09:04:59 +0000 (Mon, 18 May 2009)
Log Message:
-----------
add some tcm normalisation rules
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-18 07:30:19
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Revision: 453
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=453&view=rev
Author: p_ansell
Date: 2009-05-18 07:30:11 +0000 (Mon, 18 May 2009)
Log Message:
-----------
add sider to the list of supported external databases
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2009-05-18 00:30:11
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Revision: 452
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=452&view=rev
Author: p_ansell
Date: 2009-05-18 00:30:03 +0000 (Mon, 18 May 2009)
Log Message:
-----------
add prosite lowercase rules to interpro
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 23:41:30
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Revision: 451
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=451&view=rev
Author: p_ansell
Date: 2009-05-17 23:41:29 +0000 (Sun, 17 May 2009)
Log Message:
-----------
add pfam capitalisation rules
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 23:35:37
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Revision: 450
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=450&view=rev
Author: p_ansell
Date: 2009-05-17 23:35:29 +0000 (Sun, 17 May 2009)
Log Message:
-----------
fix prosite, prodom and interpro
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2009-05-17 23:27:13
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Revision: 449
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=449&view=rev
Author: p_ansell
Date: 2009-05-17 23:27:00 +0000 (Sun, 17 May 2009)
Log Message:
-----------
add some more useful reverse constructs for uniprot
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 23:14:13
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Revision: 448
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=448&view=rev
Author: p_ansell
Date: 2009-05-17 23:14:04 +0000 (Sun, 17 May 2009)
Log Message:
-----------
fix rule ordering so that the reverse order is used for output, so inputs are symmetrical with outputs
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 22:14:04
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Revision: 447
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=447&view=rev
Author: p_ansell
Date: 2009-05-17 22:13:51 +0000 (Sun, 17 May 2009)
Log Message:
-----------
redirect evidenceviewer namespace to evidence_viewer
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2009-05-17 22:07:14
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Revision: 446
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=446&view=rev
Author: p_ansell
Date: 2009-05-17 22:07:06 +0000 (Sun, 17 May 2009)
Log Message:
-----------
remove openlink mirror that has been down for a long time
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 22:06:03
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Revision: 445
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=445&view=rev
Author: p_ansell
Date: 2009-05-17 22:05:55 +0000 (Sun, 17 May 2009)
Log Message:
-----------
update properties
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 05:47:07
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Revision: 444
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=444&view=rev
Author: p_ansell
Date: 2009-05-17 05:47:05 +0000 (Sun, 17 May 2009)
Log Message:
-----------
deprecate atlas.bio2rdf.org for the qut.bio2rdf.org server, considering it is outdated it is not valuable currently
TODO: delete it from the configuration
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-05-17 05:19:02
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Revision: 443
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=443&view=rev
Author: p_ansell
Date: 2009-05-17 05:18:54 +0000 (Sun, 17 May 2009)
Log Message:
-----------
add status code changes depending on whether the query or the namespace were unrecognised
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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