bio2rdf-svncommits Mailing List for bio2rdf (Page 27)
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From: <p_a...@us...> - 2009-04-21 06:01:44
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Revision: 342
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=342&view=rev
Author: p_ansell
Date: 2009-04-21 06:01:41 +0000 (Tue, 21 Apr 2009)
Log Message:
-----------
fix URI's in unists rdfiser
Modified Paths:
--------------
trunk/src/util/perl/unists2n3.pl
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From: <p_a...@us...> - 2009-04-21 05:59:22
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Revision: 341
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=341&view=rev
Author: p_ansell
Date: 2009-04-21 05:59:19 +0000 (Tue, 21 Apr 2009)
Log Message:
-----------
add rdfisers from wiki
Modified Paths:
--------------
trunk/src/util/sql/create_virtuoso_index.sql
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
Added Paths:
-----------
trunk/src/util/perl/affymetrix-http2files.pl
trunk/src/util/perl/affymetrix2n3.pl
trunk/src/util/perl/cpath2mysql.pl
trunk/src/util/perl/homologene2n3.pl
trunk/src/util/perl/iproclass2n3.pl
trunk/src/util/perl/n32n3.pl
trunk/src/util/perl/namespace2rdf.pl
trunk/src/util/perl/obo-type2n3.pl
trunk/src/util/perl/unists2n3.pl
trunk/src/util/perl/uri2tab.pl
trunk/src/util/shell/count-ns.sh
trunk/src/util/shell/hgnc-wget.sh
trunk/src/util/shell/homologene-wget.sh
trunk/src/util/shell/pir-wget.sh
trunk/src/util/shell/unists-wget.sh
trunk/src/util/sparql/
trunk/src/util/sparql/biopax-db.sparql
trunk/src/util/sparql/biopax2xref.sparql
trunk/src/util/sparql/obo-uri.sparql
trunk/src/util/sql/count-ns.sql
trunk/src/util/sql/create-triples.sql
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From: <p_a...@us...> - 2009-04-21 01:24:10
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Revision: 340
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=340&view=rev
Author: p_ansell
Date: 2009-04-21 01:24:02 +0000 (Tue, 21 Apr 2009)
Log Message:
-----------
add some new ecocyc related pipes
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
Added Paths:
-----------
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_pr_tr_co_in_bi_ci_mesh.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_promoter_transcriptionunits.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_promoter_transcriptionunits_components.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_promoter_transcriptionunits_components_involvedinregulations.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_promoter_transcriptionunits_components_involvedinregulations_bindingsites.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ecocyc_promoter_transcriptionunits_components_involvedinregulations_bindingsites_citations.pipe
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From: <p_a...@us...> - 2009-04-20 08:21:21
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Revision: 339
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=339&view=rev
Author: p_ansell
Date: 2009-04-20 08:21:18 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
add "smart" namespace providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-20 06:46:58
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Revision: 338
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=338&view=rev
Author: p_ansell
Date: 2009-04-20 06:46:57 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
add a new 0.4.0 tag
Added Paths:
-----------
tags/0.4.0/
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From: <p_a...@us...> - 2009-04-20 06:39:59
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Revision: 337
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=337&view=rev
Author: p_ansell
Date: 2009-04-20 06:39:58 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
remove 0.4.0 tag as too many more improvements have been made on the trunk to make it viable as is
Removed Paths:
-------------
tags/0.4.0/
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From: <p_a...@us...> - 2009-04-20 06:17:29
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Revision: 336
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=336&view=rev
Author: p_ansell
Date: 2009-04-20 06:17:27 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
make included queries utilise the URI instead of string version
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
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From: <p_a...@us...> - 2009-04-20 06:08:19
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Revision: 335
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=335&view=rev
Author: p_ansell
Date: 2009-04-20 06:08:17 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
make sure that empty namespaces aren't given in providers either
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
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From: <p_a...@us...> - 2009-04-20 06:07:36
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Revision: 334
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=334&view=rev
Author: p_ansell
Date: 2009-04-20 06:07:35 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
make sure that http://bio2rdf.org/ns: doesn't come out in custom queries
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
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From: <p_a...@us...> - 2009-04-20 05:32:48
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Revision: 333
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=333&view=rev
Author: p_ansell
Date: 2009-04-20 05:32:47 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
add more reverse construct providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-20 04:33:24
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Revision: 332
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=332&view=rev
Author: p_ansell
Date: 2009-04-20 04:33:23 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
make /ns:KEY resolve to debug-configuration.jsp and turn all of the string namespace references into URI's
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/debug-configuration.jsp
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From: <p_a...@us...> - 2009-04-20 04:00:46
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Revision: 331
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=331&view=rev
Author: p_ansell
Date: 2009-04-20 04:00:42 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
add NamespaceEntry in order to have http://bio2rdf.org/ns:NAMESPACE entries included in the /admin/configuration/rdfxml page
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
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From: <p_a...@us...> - 2009-04-20 03:41:16
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Revision: 330
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=330&view=rev
Author: p_ansell
Date: 2009-04-20 03:41:15 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
add fulltext to robots.txt
Modified Paths:
--------------
trunk/src/war/robots.txt
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From: <p_a...@us...> - 2009-04-20 03:40:20
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Revision: 329
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=329&view=rev
Author: p_ansell
Date: 2009-04-20 03:40:19 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
fix fulltext static rdf insertion
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-20 03:37:04
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Revision: 328
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=328&view=rev
Author: p_ansell
Date: 2009-04-20 03:37:02 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
fix normalisation rule so that it works for endpoint specific db.bio2rdf.org for linkstonamespace
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-20 03:31:07
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Revision: 327
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=327&view=rev
Author: p_ansell
Date: 2009-04-20 03:31:06 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
add some more reverse construct providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-20 03:04:26
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Revision: 326
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=326&view=rev
Author: p_ansell
Date: 2009-04-20 03:04:25 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
add cog reverse construct provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-20 03:00:55
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Revision: 325
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=325&view=rev
Author: p_ansell
Date: 2009-04-20 03:00:54 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
make fulltext insertion with pubmed and active as a custom query
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-20 02:33:30
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Revision: 324
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=324&view=rev
Author: p_ansell
Date: 2009-04-20 02:33:29 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
tag 0.4.0 version
Added Paths:
-----------
tags/0.4.0/
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From: <p_a...@us...> - 2009-04-20 02:22:13
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Revision: 322
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=322&view=rev
Author: p_ansell
Date: 2009-04-20 01:30:47 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
bump version number
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/index.html
trunk/src/war/mquter-index.html
trunk/src/war/quebec-index.html
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From: <p_a...@us...> - 2009-04-20 02:00:28
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Revision: 323
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=323&view=rev
Author: p_ansell
Date: 2009-04-20 02:00:14 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
fix namespaceproviders.jsp page for new namespace match method
Modified Paths:
--------------
trunk/src/war/namespaceproviders.jsp
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From: <p_a...@us...> - 2009-04-20 01:12:40
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Revision: 321
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=321&view=rev
Author: p_ansell
Date: 2009-04-20 01:12:31 +0000 (Mon, 20 Apr 2009)
Log Message:
-----------
add reverseconstructfromlowercase
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-19 10:26:54
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Revision: 320
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=320&view=rev
Author: p_ansell
Date: 2009-04-19 10:26:45 +0000 (Sun, 19 Apr 2009)
Log Message:
-----------
add more reverse construct providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-19 10:00:19
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Revision: 319
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=319&view=rev
Author: p_ansell
Date: 2009-04-19 10:00:14 +0000 (Sun, 19 Apr 2009)
Log Message:
-----------
add h_inv providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2009-04-19 09:57:38
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Revision: 318
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=318&view=rev
Author: p_ansell
Date: 2009-04-19 09:57:33 +0000 (Sun, 19 Apr 2009)
Log Message:
-----------
add more reverse construct providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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