PRADA : Pipeline for RNA-Sequencing Data Analysis
miRNA alignment quantitation based on miRBase annotations
A set of tools for working with high-throughput sequencing data
Program to fix issues with helicos bam files.
Extract causative variants for monogenic and sporadic genetic diseases
Bycom can do methylcytosine calling (5mC calling) from BS-seq.
Sequence bias correction for BAM files without transcript annotations
Mobster: a robust tool for Mobile Element Insertion detection in NGS
Enhanced splice junction detection and estimation from RNA-Seq data
This software identifies tag-enriched regions(hotspots) from DNase-seq
TimeSheet is a simple software for management activities
A BRIC-seq data analysis package written in Python.
Generation of EJCCM files from SAM/BAM files
SOAPindel2 focusing on calling indels from the next-generation p
Probabilistic inference of viral Quasispecies
Filters indels from 454 sequence
cnvHiTSeq is a set of tools for detecting CNVs using sequencing data.
Accurate Extraction and Visualization of Next-Generation Sequence data
Quantification of Splicing Events
A fast and useful searching tool