EJCCMTools

Generation of EJCCM files from SAM/BAM files

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Last Update: 2016-10-07

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EJCCMTools is a Java software package for compression of SAM or BAM files, performing subsequent gene or transcript expression profiling and visualizing gene read coverage profiles. This novel compression scheme reduces file size by a factor of 214 compared to BAM files while keeping the full ability to analyze and visualize gene and isoform expression levels. As a result of the compression EJCCM files are generated. These files can be indexed and queried using Tabix.

Features

RNASeq data compression based on SAM/BAM files
Gene expression profiling
Transcript expression profiling

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Registered

2013-06-11

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$300 Free Credits to Build on Google Cloud

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Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.

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