ArchTEx

Quick extraction and visualization of NGS Data. Allows for calculation of strand cross-correlation to identify optimal short-read tag extension. Allows for extraction of data using a variety of data transformations. Performs genome-genome correlation of BAM files to assist in comparison of biological and technical replicates.

http://bioinformatics.oxfordjournals.org/content/early/2012/02/02/bioinformatics.bts063.abstract

Features

Batch Extraction and Visualization of NGS Data
Single-Site Extraction and Visualization of NGS Data
Genome-Genome Correlation of NGS Data
Cross-Correlation of NGS Strands to Identify DNA Length

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