Open Source Python Scientific/Engineering Software - Page 65

The Rudify tools are a collection of tools for ontology tagging.

Russian morphology tagger. Parses text(s) and output xml representation of text(s) with grammatical annotation.

Collect is a data acquisition (DAQ) program realized for the Schonland Research Centre for Nuclear Sciences of Johannesburg (South Africa). It is used to gather data from CAMAC ADCs and TDCs via a GPIB interface.

This project is for particle accelerator start-to-end simulation. The project contains software infrastructure for setting up model run as service/client mode.

This tool suite provides you with tools and guidelines for tracking your global location with a standard Symbian (S60) cell phone.

A generic game engine built on top of libksd (http://libksd.sourceforge.net/) using the Atlas (http://www.worldforge.org/website/protocols/) for the network protocol.

SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms.

SBEVSL is a collaborative project between Dowling and RIT on the development of a Structural Biology Extensible Visualization Scripting Language, so that users can move freely among various molecular graphics tools, such as rasmol, pymol, raster3d, etc.

Tools to perform metabolic control analyses on biochemical network models in SBML format. Allows computation of first and second order response coefficients, elasticities, first order control coefficients and first order spectral response coefficients.

Open source controller for Scalextric community. Scalextric Controller is composed by a custom hand controller, used to drive the Scalextric slots cars, and Android application used to communicate with the hand controller via Bluethoot low power (BLE). This project repository contains the PCB project, the micro embedded software, the Android App and the 3D CAD design of the cricital mechanical parts.

SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. Elements of symbolic computations using Octave/Matlab scripting are supported. The project was migrated to DataMelt.

SCons is a make replacement providing a range of enhanced features such as automated dependency generation and built in compilation cache support. SCons rule sets are Python scripts so as well as the features it provides itself SCons allows you to use the full power of Python to control compilation. This package is an extension (tool) to SCons, which enables "compilation" of gnuplot scripts in SCons-based projects. The intended audience include (but is not limited to) authors/publishers of LaTeX documents, scientific comunity and authors of the projects relying on automatic generation of plots.

Why use it? You can create your own Python script using model builder, but you have to modify the script everytime you want to dump different tables. Using this script you only need to have a CSV with all the table names, that’s it. Purpose: It can be used as an archival and historical database It will make you ArcSDE database portable and shareable

Control system base on new vdb technology. Name "SEA" is abbreviation of the words "Simple Expandable Automation"

python, SExtractor. A python module to read, write and manage SExtractor catalogs.

The SIMP/STEP platform provides a fast, efficient, portable abstract framework for interactive and scripted cellular automata and lattice gas computing in the Python environment. SIMP provides a high-level 'programmable matter' laboratory built on

SINAM -- Simulation Interface for Network Analysis of Metabolism

In the selective laser melting process (SLM), components are built up layer by layer by incremental melting of metal powder with a laser beam. This process leads to locally inhomogeneous material properties of the manufactured components. By integrating these specific material properties of the SLM-process into a topology optimization, product developers can be supported in the design process by simulation. For this purpose, a topology optimization method is being developed which takes into account the unique material properties of parts manufactured with the SLM-process. In this homepage, the generation of a material database as well as the development of the topology optimization method is introduced and the impact on the component design is presented. SLM-Topo is a joint research project of the Institute of Product Engineering (IPEK) and the Institute for Applied Materials (IAM) of the Karlsruhe Institute for Technology (KIT) funded by the Deutsche Forschungsgemeinschaft (DFG).

SLiMScape adds Short linear motif discovery tools to Cytoscape, transforming it into a SLiM discovery platform. A tutorial is available at the following URL: http://bioware.ucd.ie/slimscape/

This project is a python script to abstract S.M.A.R.T. messages from /var/log/messages (from the smartd daemon) into .csv file(s), one for each disk, suitable for graphing.

SMMP (Simple Molecular Mechanics for Proteins) is a program library for protein simulations with an emphasis on advanced Monte Carlo algorithms. It includes various force fields to calculate the energy of a protein and protein-protein interactions.

Simulator for large neuronal networks using leaky INF as its basic element. Simple few line scripts will enable rapid creation of large networks with different connectivities. Aimed at researchers interested in quickly testing large networks of neurons.

The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE.

SPChart is free software to plot S-paramters from touchstone format(SNP)