Search Results for "linux-secure"
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Showing 892 open source projects for "linux-secure"
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Linux GPIB Support
Linux GPIB Driver package (source)
The Linux GPIB Package is a support package for GPIB (IEEE 488.2) hardware. The package contains a development environment consisting of a GPIB library written in C, kernel driver modules, and bindings for several other languages. -
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Th3inspector
Best Tool For Information Gathering
...It exposes a single command-line entrypoint (Th3inspector.pl) with many switches for common reconnaissance tasks — examples include website info, whois, MX lookup, geo-IP, subdomain discovery, CMS detection, port scanning, and Cloudflare real-IP resolution — so a user can chain many checks from one script. The project provides simple install wrappers for Linux, Android/Termux and even instructions for Windows (Perl + CPAN modules), and includes helper scripts to update or install dependencies automatically. The repository is actively packaged as versioned releases in the README (current noted version 1.9) and is distributed under an MIT license. -
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Prokka
Rapid prokaryotic genome annotation
Prokka is a command-line software tool for rapid annotation of prokaryotic genomes (bacteria and archaea). Given a FASTA file of contigs, it predicts genes, rRNAs, tRNAs, and other functional elements, then assigns functions by comparing to reference protein databases and HMM profiles. It outputs GenBank, GFF, and other formats compatible with downstream tools and genome browsers. Prokka handles common complications—overlapping ORFs, frameshifts, alternate start codons—while providing... -
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CTK
CLIP Tool Kit (CTK)
CTK (CLIP Tool Kit) is a computational biology toolkit implemented in Perl, designed for analyzing CLIP sequencing data. It offers a streamlined pipeline from raw reads through peak calling and motif discovery. -
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SDT-weather-com
LMS SuperDateTime Weather.com Plugin
This is a plugin for Lyrion Media Server Squeezebox players. It provides the SuperDateTime plugin functionality originally developed by Greg Brown using weather.com data. Repository URL: http://sourceforge.net/projects/sdt-weather-com/files/repo.xml or http://downloads.sourceforge.net/project/sdt-weather-com/repo.xml -
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Ham Radio Control Libraries
Library to control radio transceivers and receivers
The Hamlib project's purpose is to develop flexible and portable shared libraries that offer a standardized API to control any radio oriented equipment through a computer interface. -
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SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
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Free DELTA
Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format. -
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Monte Carlo eXtreme (MCX)
Physically accurate and validated GPU ray-tracer
MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel. -
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NCO netCDF Operators
Command-line operators for netCDF and HDF files
The netCDF Operators, or NCO, are a suite of file operators which facilitate manipulation and analysis of self-describing data stored in the (freely available) netCDF and HDF formats. Volunteers welcome! See homepage for details and download links. -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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Systems Biology Markup Language (SBML)
A file format for exchanging computational models in systems biology
The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more. -
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RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX documents, sort of a Reference Manager or BibTeX for markup languages. It is portable and known to run on Linux, Free/NetBSD, OSX, Solaris, and Windows/Cygwin.
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FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes. FragGeneScan was first released through omics website (http://omics.informatics.indiana.edu/FragGeneScan/) in March 2010, where you can find its old releases. FragGeneScan migrated to SourceForge in October, 2013.
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MView
Extract and reformat a sequence database search or multiple alignment
NOTE: The MView repository and web pages have moved to: https://github.com/desmid/mview https://desmid.github.io/mview/ Release tarballs will continue to be uploaded to SourceForge. ---- MView is a command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common... -
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WxTools (Weather Data Tools)
This package collects Fine Offset and Oregon Scientific weather data.
WxTools (Weather Data Tool Suite) is a collection of software for collecting and displaying weather data from various weather stations. The software works with the Fine Offset WH290 and similar models (including clones such as the Pro-Signal PSG04173). It also works with the Oregon Scientific WMR180 weather station (and probably similar models such as the WMR88 and WMR100) as well as the older WMR928. Sample weather data is provided. -
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VTracer is a Verilog Testbench developer aid. Contains well documented Verilog-Perl co-simulation environment (TCP sockets based), structural Verilog parser, demo Testbenches.
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metaf2xml
Parse and decode METAR, TAF, SYNOP, BUOY, AMDAR and write data as XML
metaf2xml can download, parse and decode aviation routine weather reports (METAR, SPECI, SAO), aerodrome forecasts (TAF), synoptic observations (SYNOP), observations from buoys (BUOY) and meteorological reports from aircrafts (AMDAR). Data can also be taken from decoded BUFR messages. The extracted data can be written as XML or passed to a user-defined function (all done in Perl). It also provides XSLT style sheets to convert the XML to plain language (text, HTML), or XML with different... -
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bbbike
An information system for cyclists in Berlin and Brandenburg
A bike information system for cyclists in Berlin and Brandenburg (Germany) with a map view and a routing engine. There's a graphical interface (based on Perl/Tk) as well as an Web interface. Source code may be found at Github: https://github.com/eserte/bbbike/ -
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Simple Event Correlator (SEC) is a lightweight event correlator for network management, log file monitoring, security management, fraud detection, and other tasks which involve event correlation.
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Manatee is a web-based gene evaluation and genome annotation tool. Manatee can store and view annotation for prokaryotic and eukaryotic genomes.
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Depth Conversion uncertainty analysis for the oil and gas industry. Incorporates cross-validation and multiple iterations.
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In addition to RPKM (Reads Per Kbp per Million reads) values, RACKJ computes read counts for exons and splicing events. In so doing, it is feasible to compare two samples and identify genes with most significant difference in exon(splicing)-level.
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idcp
Control program for Undulators at the BESSYII Synchrotron
The BESSY II synchrotron is operated at the Helmholtz-Zentrum Berlin. Undulators are moveable magnetic structures that force the electron beam on a curved trajectory creating synchrotron radiation. This project is the undulator control software. -
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FullSSR
SSR detection and primer designing software
Traditional methods for isolation of microsatellites (SSRs) are often expensive and time consuming. Nowadays is easier and cheaper to obtain genomic data from next generation sequencing. Then, at least two software need to be applied in order to obtain SSR primers of SSR flanking sequences for PCR assays. Here we propose new software that allows the user to work with several sequences for PCR primer design in one step.
