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CTK (CLIP Tool Kit) is a computational biology toolkit implemented in Perl, designed for analyzing CLIP sequencing data. It offers a streamlined pipeline from raw reads through peak calling and motif discovery.

Features

Parses raw CLIP-seq reads and performs quality filtering
Identifies cross-linking induced mutation sites (CIMS)
Detects enriched RNA motif regions and peaks
Outputs standardized BED/narrowPeak formats
Extensible via Perl scripts (e.g. tag2cluster, tag2collapse)
Comprehensive documentation and active user support group

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Additional Project Details

Operating Systems

Linux, Mac, Windows

Programming Language

Perl

Related Categories

Perl Scientific Engineering

Registered

2025-07-10

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