FragGeneScan

FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes.

FragGeneScan was first released through omics website (http://omics.informatics.indiana.edu/FragGeneScan/) in March 2010, where you can find its old releases. FragGeneScan migrated to SourceForge in October, 2013.

Features

FragGeneScan can be used for gene prediction in complete genomes, assemblies, and short reads.
Plug and use -- no need to train specific models for different datasets
FragGeneScan handles sequencing errors.

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Additional Project Details

Intended Audience

Healthcare Industry, Information Technology

User Interface

Console/Terminal

Programming Language

C, Perl

Related Categories

Perl Bio-Informatics Software, C Bio-Informatics Software

Registered

2013-10-22

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