VIGOR3

VIGOR is a tool for annotating coding genes in viral genomes. It was developed by Jeffrey Hoover and Shiliang Wang for The JCVI Genomic Sequencing Center for Infectious Diseases (GSCID).

http://www.biomedcentral.com/content/pdf/1471-2105-11-451.pdf

contact:
Jeff Hoover
301-540-7858
jefhv@aol.com

Features

understands RNA editing, ribosomal slippage, stop codon read-thru & alternate start codons
annotates mature peptides on polyproteins
handles spliced, overlapping, and embedded genes
handles circular, partial, and draft (gapped) genomes
diagnoses frameshifts in assembly
includes reference datasets for more than 50 species
includes tools for creating new reference datasets

Project Samples

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License

GNU General Public License version 3.0 (GPLv3)

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VIGOR3 Web Site

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Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Perl

Database Environment

SQLite

Related Categories

Perl Bio-Informatics Software

Registered

2014-04-18

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