Showing 1867 open source projects for "all-in-one"

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  • 1

    OpenVigil

    Open pharmacovigilance data extraction, mining and analysis tool

    ... or reporting odds ratios) and export to spreadsheets programs like Microsoft Excel or statistics programs like R. OpenVigil 1 operates on raw data, OpenVigil 2 on cleaned data (using drugbank.ca and drugs@FDA), OpenVigilFDA uses the official FDA online API. OpenVigil 2 supports query for ATC codes or certain chemical moieties. Other tools of the OpenVigil project include a calculator for measurements of disproportionality for a 2x2 contingency table and a drugname mapper using RxNorm.
    Downloads: 45 This Week
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  • 2
    Monte Carlo eXtreme (MCX)

    Monte Carlo eXtreme (MCX)

    Physically accurate and validated GPU ray-tracer

    MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel.
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    Downloads: 40 This Week
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  • 3
    Image To Gerber Converter

    Image To Gerber Converter

    Convert any image to gerber and drill files

    ... improvements and updating your design, as you will be able to make design modifications, add a silkscreen layer, resize drill diameters, create a soldermask layer to protect copper areas and to avoid accidental shorts, convert a single-side design into a double-side or multi-layer design,… all that just by editing your image with your preferred image editor.
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    Downloads: 37 This Week
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  • 4
    The Open ISES Project
    Open Information Systems for Emergency Services (Open ISES) is a community of software developers, paramedics, EMTs, law enforcement & fire fighters working together to create open source software & training materials for the emergency service community.
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    Downloads: 34 This Week
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  • 5
    asammdf

    asammdf

    Fast Python reader and editor for ASAM MDF / MF4 (Measurement Format)

    *asammdf* is a fast Python parser and editor for ASAM (Associtation for Standardisation of Automation and Measuring Systems) MDF / MF4 (Measurement Data Format) files. It supports MDF versions 2 (.dat), 3 (.mdf) and 4 (.mf4). *asammdf* works on Python 2.7, and Python >= 3.4
    Downloads: 29 This Week
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  • 6

    kSNP

    kSNP4 does SNP discovery and SNP annotation from whole genomes

    ..., unassembled reads. Finished and unfinished genomes can be analyzed together, and kSNP can automatically download Genbank files of the finished genomes and incorporate the information in those files into the SNP annotation. No programming skills are required to use kSNP4 Gardner, S.N. and Hall, B.G. 2013. . PLoS ONE, 8(12):e81760.doi:10.1371/journal.pone.0081760 Gardner, S.N., T. Slezak, and B.G. Hall. 2015 Bioinformatics 31: 2877-2878 doi: 10.1093/bioinformatics/btv271
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    Downloads: 28 This Week
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  • 7

    Chemical Trajectory Analyzer

    A software package for processing and analyzing chemical trajectories

    ChemTraYzer creates reaction models from molecular dynamics simulations. It's available as open software (MIT license). Please find a full description @ https://www.ltt.rwth-aachen.de/cms/LTT/Forschung/Forschung-am-LTT/Model-Based-Fuel-Design/Aktuelle-Projekte/~kqbf/ChemTraYzer/lidx/1 M.Döntgen, M.-D.Przybylski-Freund, L.C.Kröger, W.A.Kopp, A.E.Ismail, K.Leonhard, "Automated Discovery of Reaction Pathways, Rate Constants, and Transition States Using Reactive Molecular Dynamics Simulations...
    Downloads: 23 This Week
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  • 8
    MESMER is designed to analyze and simulate reactions in the gas phase that take place on a potential energy surface that is characterized by having one or more potential wells, and which are typically described by rate coefficients that depend on pressure (or concentration) as well as temperature. MESMER allows you to simulate systems over a wide range of pressures and temperatures, extract rate coefficients, analyze experimental data, fit model parameters and represent rate coefficients...
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    Downloads: 19 This Week
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  • 9
    Meteorologist Classic

    Meteorologist Classic

    your weatherman without the man

    A lightweight macOS menubar app to display weather data, from multiple weather sources, for unlimited locations. Get the weather report you want, customized to how you want it, at the click of a button. The Classic version is like a classic car, restored to its former glory, now overhauled and enhanced. Visit the original project[1] for some legacy background as well as Ed's modifications over WeatherBar[2]. [1] <https://sourceforge.net/projects/heat-meteo> [2] <http://footle.org...
    Downloads: 16 This Week
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  • 10
    relax

    relax

    Molecular dynamics by NMR data analysis

    The software package 'relax' is designed for the study of molecular dynamics through the analysis of experimental NMR data. Organic molecules, proteins, RNA, DNA, sugars, and other biomolecules are all supported. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using...
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    Downloads: 15 This Week
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  • 11

    DDE-BIFTOOL

    Bifurcation analysis for delay-differential equations

    DDE-BIFTOOL is a set of routines for performing numerical bifurcation analysis of delay-differential equations, running in Matlab or Octave[2]. It was originally created by Koen Engelborghs at KU Leuven (Belgium). [1] Tutorial demo <http://ddebiftool.sourceforge.net/demos/neuron/html/demo1_simple.html> shows the output of an illustrative demo. <http://ddebiftool.sourceforge.net> links to documentation, a list of contributors and current maintainers. The original DDE-BIFTOOL webpage...
    Downloads: 13 This Week
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  • 12
    miRDeep*

    miRDeep*

    MiRDeep*

    Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction.
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    Downloads: 13 This Week
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  • 13
    MacPHREEQC

    MacPHREEQC

    macOS version of the USGS geochemical modeling code PHREEQC

    The macOS version of PHREEQC, a program developed by the U.S. Geological Survey for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations
    Downloads: 12 This Week
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  • 14
    SMILI

    SMILI

    Scientific Visualisation Made Easy

    ... user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. The applications are all built out of a uniform user-interface framework that provides a very high level (Qt) interface to powerful image processing and scientific visualisation algorithms from the Insight Toolkit (ITK) and Visualisation Toolkit (VTK). The framework allows one to build stand-alone medical imaging applications quickly and easily.
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    Downloads: 9 This Week
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  • 15
    p3d

    p3d

    General data-reduction tool for fiber-fed integral-field spectrographs

    p3d is a general data-reduction tool for use with fiber-fed integral-field spectrographs (IFSs); although, the spectrum viewer works with spectrum data cubes of any origin. The tool is built about the proprietary software IDL (Harris/EXELIS; see http://www.harrisgeospatial.com), but can be used without any license. Most slowly running loops are implemented in parallelized C (OpenMP).
    Downloads: 8 This Week
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  • 16
    Open source Algol 68 implementations

    Open source Algol 68 implementations

    Implementations for the Revised Report language

    This project offers open source implementations for UNESCO/IFIP's Algol 68 (the Revised Report language). The project offers two implementations: Implementation 1 is Algol68G: a recent checkout hybrid compiler/interpreter by Marcel van der Veer, supporting arbitrary arithmetic, partial parametrisation, complex numbers, POSIX threads, GNU plotutils, GNU scientific library, curses, sound, TCP sockets, RegEx and PostgreSQL. Inplementation 2 is algol68toc, a port by Sian Mountbatten...
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    Downloads: 13 This Week
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  • 17
    DAE Tools Project

    DAE Tools Project

    Object-oriented equation-based modelling and optimisation software

    ..., such as plotting and exporting to various file formats - Report generation - Code generation, co-simulation and model exchange The following class of problems can be solved by DAE Tools: - Initial value problems of implicit form - Index-1 DAE systems - With lumped or distributed parameters - Steady-state or dynamic - Continuous with some elements of event-driven systems
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    Downloads: 10 This Week
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  • 18
    Open Beam Profiler

    Open Beam Profiler

    Profiling and analysis of laser beams with ImageJ

    This open-source software enables profiling and analysis of laser beams. It can be used with a variety of cameras supported by ImageJ and Micro-Manager, or images from any other source. It provides all common analysis methods like D4Sigma, knife-edge, as well as fitting of Hermite-Gauss and super-Gauss functions.
    Downloads: 11 This Week
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  • 19
    NLIGA

    NLIGA

    Open source Matlab code for nonlinear isogeometric analysis

    ... to visualize the obtained results including displacements, stresses and numerical errors. References: [1] Xiaoxiao Du, Gang Zhao, Wei Wang, Mayi Guo, Ran Zhang, and Jiaming Yang. NLIGA: A MATLAB framework for nonlinear isogeometric analysis. Computer Aided Geometric Design, 2020, 80:101869. [2] Xiaoxiao Du, et al. Numerical implementation for isogeometric analysis of thin-walled structures based on a Bézier extraction framework: nligaStruct. Thin-Walled Structures, 2022,180:109844
    Downloads: 11 This Week
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  • 20
    K3DSurf
    K3DSurf (now MathMod) is a program to visualize and manipulate Mathematical models in three, four, five and six dimensions. K3DSurf supports Parametric equations and Isosurfaces. ****** Welcome to the realm of complex numbers! Change-log for MathMod-11.1 (16/06/2021) 1) Support of graphing functions with complex numbers Z=u+iv in 3D and 4D spaces (demo scripts: "Complex3D_xx" and "Complex4D_Saddle") 2) Added support for HSV (hue, saturation, brightness) coloring model (script...
    Downloads: 11 This Week
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  • 21
    Open-source interpreted Verilog simulator with a feature set and performance similar to Verilog-XL. Implements all IEEE 1364-1995 features along with some Verilog-2001 features. Full support for Verilog PLIs.
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    Downloads: 10 This Week
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  • 22

    ccgsl

    Use Gnu Scientific Library as if it were writtem in C++.

    The ccgsl provides simple C++ wrappers for the GNU Scientific Library. It uses Java-like shared-pointer classes in place of structs to avoid direct memory allocation/freeing and to work better with the STL. It lets you construct functions for optimisation, root-finding and the like from C++ member functions, making it easier to integrate with existing C++ code. It also provides C++ exceptions.
    Downloads: 10 This Week
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  • 23
    mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
    Downloads: 9 This Week
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  • 24
    Gap.app

    Gap.app

    Gap.app is a frontend and distribution for GAP on macOS

    A native Macintosh front-end and distribution for the GAP computer algebra system. It provides a Mac-like command editing environment and save/load, while making available graphical libraries compatible with xgap.
    Downloads: 21 This Week
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  • 25
    Project: Olympus

    Project: Olympus

    An Arduino-based Altitude and IMU Payload for Model Rocketry

    ... at how to calculate the proper size vent holes to allow the altimeter to function properly, as well as how ambient air temperature can affect your altitude results. The project isn't completely finished even after all of the construction is done, as we include a section on how we can improve this version of the project in future builds.
    Downloads: 8 This Week
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