Showing 53 open source projects for "all-in-one"

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  • 1
    FastQC

    FastQC

    A quality control analysis tool for high throughput sequencing data

    FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should...
    Downloads: 52 This Week
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  • 2
    QUAST

    QUAST

    Quality Assessment Tool for Genome Assemblies

    QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. QUAST computes a number of well-known metrics, including contig accuracy, number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and in the manual). A comprehensive analysis results in summary tables (in plain text, tab-separated and LaTeX formats) and colorful plots. The tool also produces web-based reports condensing all information in one...
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    Downloads: 105 This Week
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  • 3

    QTester104

    IEC 60870-5-104 protocol tester.

    This software implements the IEC60870-5-104 protocol (client side) for substation data acquisition and control via tcp/ip network using the QT UI Framework. It can be compiled on Linux and Windows platforms. It's possible to poll and view data from the remote system (RTU) and also send commands. >>> Have a look also at my new SCADA project here: https://github.com/riclolsen/json-scada
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    Downloads: 92 This Week
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  • 4
    asammdf

    asammdf

    Fast Python reader and editor for ASAM MDF / MF4 (Measurement Format)

    *asammdf* is a fast Python parser and editor for ASAM (Associtation for Standardisation of Automation and Measuring Systems) MDF / MF4 (Measurement Data Format) files. It supports MDF versions 2 (.dat), 3 (.mdf) and 4 (.mf4). *asammdf* works on Python 2.7, and Python >= 3.4
    Downloads: 33 This Week
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  • 5
    Open Beam Profiler

    Open Beam Profiler

    Profiling and analysis of laser beams with ImageJ

    This open-source software enables profiling and analysis of laser beams. It can be used with a variety of cameras supported by ImageJ and Micro-Manager, or images from any other source. It provides all common analysis methods like D4Sigma, knife-edge, as well as fitting of Hermite-Gauss and super-Gauss functions.
    Downloads: 9 This Week
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  • 6
    xrayutilities

    xrayutilities

    a package with useful scripts for X-ray diffraction physicists

    xrayutilities is a python package used to analyze x-ray diffraction data. It can support with performing diffraction experiments and used for common steps in the data analysis. It can read experimental data from several data formats (spec, edf, xrdml, ...); convert them to reciprocal space for arbitrary goniometer geometries and different detector systems (point, linear as well as area detectors); for further processing the data can be gridded (transformed to a regular grid). More...
    Downloads: 4 This Week
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  • 7
    StarFishDAQ

    StarFishDAQ

    A general purpose data acquisition system and development platform.

    ...-of-concent experiments and protoypes. Another use is to customize the design by removing features that are unneeded for a project, adding new, specific features and designing custom versions for a project. A hybrid approach is also useful: adding custom hardware to an expansion PCB, while using the vanilla PCB as is. All approaches result in a faster bring-up with more focus on project specific features, and less on table-stakes tech.
    Downloads: 3 This Week
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  • 8
    GPP-x32x Firmware Mod
    Firmware mod for the GWInstek GPP-x32x series lab bench supply.
    Downloads: 0 This Week
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  • 9

    CoolingPower

    Print Steam Tables; Plot diagrams and cycles from equations of state

    CoolingPower is NOT in a condition for use at this time. A couple of bugs have been discovered that severely affect the calculation accuracy. While I troubleshoot, use at your own risk. Once completed, CoolingPower will have the capability to plot diagrams of thermodynamic properties, construct Steam Tables, and plot thermodynamic cycles. Initial fluid will be water/steam, but functionality will extend to include a variety of working fluids. CoolingPower operates in GUI format and, for...
    Downloads: 0 This Week
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  • 10

    L3-3 Test Card Generator

    Card generator for the russian L1-3/L3-3 tube tester.

    ..., no guarantees) be fixed by now and lots of functionality added. I created a good amount of cards for myself and they were all fine, so I deceided to make a public alpha release again. I also added a short manual (only German by now, translation soon follows) including a few examples. If anything gets wrong, please report to me. I need your reports to fix bugs. You can help move this to beta ;).
    Downloads: 2 This Week
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  • 11
    xSMBus - Java I2C/SMBus API

    xSMBus - Java I2C/SMBus API

    USB Bridge for SMBus(I2C), GPIO, and Clock, Java API

    [Introduction] xSmbus-m01 is not only a Java API, but also a program that can be executed separately. The following are its function options: Need to be executed at the command prompt, java -jar /YourPath/xSmbus-m01-1.0p.jar Help - list the parameter table Verification - verify that the product is working properly Test - used for system maintenance, in advance Check - determine if there is a device on the I2C location Scan - search in the range of 00-FF, search out on the I2C bus all...
    Downloads: 1 This Week
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  • 12

    freesrs

    python library for shock response spectrum (SRS) analysis.

    The shock response spectrum (SRS) allows to estimate transient acceleration signals in terms of a maximum response of a dynamic vibration system. Its origin probably dates from civil engineering and the problem of seismic excitations, i.e. earthquake response of buildings, see Clough Penzien 1975. The SRS is a spectrum, i.e. a curve giving the maximum acceleration response depending on frequency. It is derived from a 1-mass-spring-damper vibration system being excited by a base excitation, i.e...
    Downloads: 0 This Week
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  • 13
    scnu

    scnu

    Fortran codes for SCNURS method - Side Cut Non-Uniform Residual Stress

    SCNURS - Side Cut Non-Uniform Residual Stress measurement method for plates, - is a destructive RS measurement method developed in Moscow, Russia and later in Bristol, UK. The method is specifically designed for the measurement of highly non-uniform RS fields, including discontinuities, in plates. This project collects all codes which implement forward and inverse solution to the RS problem. The codes are in modern Fortran with OpenMP. The codes are distributed under 2-clause BSD license...
    Downloads: 0 This Week
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  • 14
    Crevaya
    General purpose dataflow programming language.
    Downloads: 0 This Week
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  • 15

    fNBookForm2 for Mathematica

    print sci num with powers (txtbook) + read back

    fNBookForm2 prints a number in Textbook Form with powers abbreviations in place of exponents (default). Output is a compressed dressed form textbooks use for significant figures tables. Easy, quality, comprehensive. booknum reads such. an important aspect is that the result maintains both accuracy and precision and has rounding control. doing this sometimees requires careful planning (error-prone complicated conversions). can read them back from textbook (into Mathematica)...
    Downloads: 0 This Week
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  • 16
    Months4Mathematica

    Months4Mathematica

    more calendar conversions, epochs, JDN, moon, +

    extra astronomical / calendar / epoch features that mathematica does not have. has many new functions. supports multiple calendars (julian, gregorian, synodic, anomalistic). supports JDN conveniently, shows moon phase est. NEW: supports day number from 0 of any calendar conversion all-way between supported calendars supports multiple epochs and epoch generation. convert between some epochs without calendar support, ie, J2000.0, JDN, to some effect can create/import epochs...
    Downloads: 0 This Week
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  • 17

    MerDAQ

    A DAQ solution in Python 2 for your Ardruino

    MerDAQ is a data acquisition GUI and other tools for collecting and storing time dependent. Originally designed to collect 4 temperature data vs. time and plot one of the temperatures in real time with matplotlib. Ideal for use with Arduino.
    Downloads: 0 This Week
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  • 18

    fast_count_multi

    Extremely fast NGS read counter

    Counts NGS read alignments against GTF annotations in a multithreaded and scalable fashion. Benchmark: 8 core 1M annotations for 2Gb sorted reads ~30 seconds compared to ~28 minutes for bedtools multicov. Files include: fast_count_multi - reports all counts and RPKM, multithreading support fast_count_deseq - reports gene counts in deseq compatible format, multithreading support fast_count - reports all counts with no multithreading support. usage ./fast_count_multi num_threads...
    Downloads: 0 This Week
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  • 19
    Testability Measurement Tool

    Testability Measurement Tool

    Performs SCOAP and PODEM algorighms on ISCAS89 Netlists.

    This application calculates combinational and sequential SCOAP parameters (CC0, CC1, CO, SC0, SC1, SO) and Testability Index parameter from a ISCAS89 netlist. It also performs the PODEM algorithm to check testability of a net against a single stuck at 0 or 1 fault.
    Downloads: 2 This Week
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  • 20
    Ava: Testdata Xsl

    Ava: Testdata Xsl

    generates Testdata on base of excel: creates xml,excel,csv,html,sql,+

    this tool for test-data-generation receives an 'excel-sheet' as primary input. second important paramter is the 'number of test-records to produce'. The excel-data will be reused as long data is needed. This tool is hightly paramatrisazable by the use of 'xsl scripts'. data can be created, updated, modified and finally exported in a format of your choice Main Fuctions: (1) Generates Testdata (excel, xsl, xml) (2) Exports generated testdata in multiple formats (csv, excel, html, sql-insert...
    Downloads: 0 This Week
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  • 21

    uaiMockServer

    uaiMockServer will create a Rest Server for you with only one command

    Create a mock server to your tests with just one command line. The documentation can be found in: http://uaimockserver.com The source code in here: https://github.com/uaihebert/uaiMockServer
    Downloads: 0 This Week
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  • 22

    kagwang

    A wireshark dissector plugin for the IEEE 1905.1 protocol.

    The IEEE 1905.1 standard describes a convergent digital home network for heterogeneous technologies, such as PLC, WLAN, Ethernet and MoCA. This dissector enables Wireshark to understand, display and analyze IEEE 1905.1 traffic. It is implemented as a LUA script and can thus be easily plugged-into an existing wireshark installation. See the comments at the beginning of the file for hints on how to install the plugin.
    Downloads: 0 This Week
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  • 23

    Network Analyzer

    Analyze the network carateristics like Delay, Jitter, Packet loss etc.

    This software is a very simple network analyzer. When you click the start button, it will send a configurable stream of UDP packets to a host. (The receiving host is then required to echo all the packets back to the sender, which can be easily done via iptables rule under linux). Once the eched packets arrives back to the sender, the analyzer will calculate all the related statistics like, packet loss, jitter throughput etc... NOTE: in order to receive the echo packets you must configure...
    Downloads: 0 This Week
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  • 24

    JUnit Execution & Report Generation Tool

    Runs JUnit Test cases and generate HTML report, keeps past run history

    This tool pulls all JUnit testcases from the class path and run them all. After completion of test case execution it populates the result in database tables. A report tool fetch the result data from database and produce an HTML report. Highlights of this tool - No coding effort is required from developer to integrate existing JUnit test cases. They just need to put their test case folder to the class path - Since it keep the test result data in a database, it can keep history of any...
    Downloads: 0 This Week
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  • 25
    The main objective of the benchmark is to enable an environment that provides reference information needed to support research within the area of ​​Mutation Analysis SQL, with an emphasis on search techniques for reducing databases. The Benchmark was built and available with two different scenarios, each scenario has its own characteristics and can be used independently of each other. Basically each scenario consists of a database Production (BDP) large volume that simulates a real...
    Downloads: 0 This Week
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