Showing 2280 open source projects for "compiler python linux"

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  • 1

    PolyCTLDesigner

    Python scripts for designing polyepitope T-cell immunogens

    Given the peptides (T-cell epitopes) PolyCTLDesigner selects flanking sequences to optimize TAP-binding and joins resulting oligopeptides into a polyepitope in a way providing efficient liberation of potential epitopes by proteasomal and/or immunoproteasomal processing and minimizing the number of junctional epitopes. For constructing polyepitopes PolyCTLDesigner utilizes known amino acid patterns of proteasome cleavage and TAP-binding specificity. PolyCTLDesigner is also able to choose...
    Downloads: 0 This Week
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  • 2

    math toolkit

    A C++ and Python library for finance, statistics and linear algebra.

    A lightweight C++ and Python library for finance, statistics and linear algebra. Finance features include compound rate present/future value, annuity, various present/future value coefficients ... Statistics features include mean, median, variance, standard deviation, covariance, correlation, linear regression, probabilities and random variates of various distributions ... Linear algebra features include matrix arithmetic, inverse, determinant, rank, linear system solution, lu/qr...
    Downloads: 0 This Week
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  • 3

    Tuque

    Tools for mapping RNA-Seq reads to eukaryotic genomes

    Tuque includes 4 programs: tuqueIndex to prepare Bowtie indexes that include spliced sequences tuqueMap to map reads using the prepared indices tuqueSplice to find splice junctions from the reads tuqueCount to count the reads mapping within annotated sequence intervals
    Downloads: 0 This Week
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  • 4
    Math tools in Python to tackle down problems in Operational Research fields. Comes with a Django based web interface to allow remote access to complex simulation means.
    Downloads: 0 This Week
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  • 5
    ParaSim

    ParaSim

    Parallelized calculation of molecular similarities

    Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently...
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  • 6
    ASCEND modelling environment
    ASCEND is a modelling environment and solver for large or small systems of non-linear equations, for use in engineering, thermodynamics, chemistry, physics, mathematics and biology. Solvers for both steady and dynamic (NLA & DAE) problems, are provid
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    Downloads: 11 This Week
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  • 7
    Voice keyboard/dictation. Aims to be a total substitute for a keyboard. Spell out words letter by letter (using code: alpha, bravo, ..). Arrow keys, modifiers work. Speak whole words (but whole word accuracy is not good). Attach commands to some word
    Downloads: 0 This Week
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  • 8

    CDSbank

    multi-sequence extraction, filtering & formatting

    CDSbank is a database that stores both the protein-coding DNA sequence (CDS) and amino acid sequence for each protein annotated in Genbank. CDSbank also stores Genbank feature annotation, a flag to indicate incomplete 5’ and 3’ ends, full taxonomic data, and a heuristic to rank the scientific interest of a species. This rich information allows fully automated data set preparation with a level of sophistication that meets or exceeds manual processing. Defaults ensure ease of use for typical...
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  • 9
    PyPak is a Python library for communication with Campbell Scientific dataloggers through the PakBus interface over TCP/IP or serial lines.
    Downloads: 0 This Week
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  • 10

    X-Freq

    X-Ray Reflectivity Frequency Analysis

    Analyze the thicknesses of a sample from an x-ray reflectivity dataset using Fourier Transform techniques.
    Downloads: 0 This Week
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  • 11

    Webapp

    A web interface to the SnowyOwl gene prediction pipeline

    Downloads: 0 This Week
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  • 12
    CAPLET

    CAPLET

    GDS visualization and parallelized capacitance extraction

    Project CAPLET is a capacitance extraction toolkit that extract capacitance at field-solver accuracy. CAPLET can directly handle GDS2 layout files into capacitance matrices in both GUI and command line interfaces. The internal extraction algorithm is specialized for VLSI interconnect structures but not exclusively, as long as the structure is of Manhattan geometry and embedded in a uniform dielectric material.
    Downloads: 0 This Week
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  • 13
    Constrained Manipulation Planning Suite

    Constrained Manipulation Planning Suite

    openrave plugins for constrained manipulation

    ...The planning and inverse kinematics algorithms in this suite are designed for articulated robots like robotic arms and humanoids. CoMPS is implemented in C++ and compiles in linux only. There are also several examples in python and matlab that show how to interface with openrave to use the plugins in CoMPS. It has been tested on all Ubuntu version from the last few years and will probably work with most modern linux distributions. Please see the wiki for installation and examples: https://sourceforge.net/p/comps/wiki/Home/
    Downloads: 0 This Week
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  • 14
    QtoNum

    QtoNum

    python calculus library with imprecise and precise representations

    QtoNum is a calculator for qualitative values (-, +), intervals and crisp numbers with arbitrary precision. QtoNum also handles infinitesimals and infinites. All these types can be mixed in expressions and conversions are performed automatically. QtoNum can be used as an interactive calculator (command line) and as a calculus library.
    Downloads: 0 This Week
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  • 15

    NetStress-NG

    NetStress is a DDoS and network stress testing tool.

    Syn Flood Attacks SYNFlood with static source port SYNFlood with random source port SYNFlood with static source ip address SYNFlood with random source address SynFlood with fragmented packets ACK Flood Attacks ACK Flood with static source port ACK Flood with random source port ACK Flood with static source ip address ACK Flood with random source address ACK Flood with fragmented packets FIN Flood Attacks FIN Flood with static source port FIN Flood with random source...
    Downloads: 3 This Week
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  • 16
    AutoFlight

    AutoFlight

    AutoFlight is a powerful, open source AR.Drone control program.

    AutoFlight features AR.Drone control with a gamepad or joystick, sensor data logging, 3d mapping, Python scripting to automate the drone's behavior and Arduino extensions.
    Downloads: 0 This Week
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  • 17

    galaxyPhotometrySimulator

    Set of scripts to perform galaxy photometry simulations.

    This project contains a set of python scripts to perform SExtractor galaxy photometry simulations. It uses Galfit to simulate the galaxies and SExtractor for the photometry. It is defined to be used also with distributed computing and with Condor. No very well documented yet. Developed for my PhD.
    Downloads: 0 This Week
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  • 18
    SZARP is a full-featured, open source (GPL) SCADA system for Linux. Client programs are available for Linux and Windows.
    Downloads: 0 This Week
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  • 19

    ppc_sim_booke

    e500v2 simulator

    An experimental ISS for freescale's e500v2 core. It is meant to simulate only cpu and memory subsystem and is purely intended for academic/learning purposes only.
    Downloads: 0 This Week
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  • 20

    RASPnmr

    Protein NMR backbone resonance assignment

    RASP uses structure-based chemical shift predictions to solve the backbone resonance assignment problem in protein NMR spectroscopy. This enables rapid determination of highly accurate assignments on the basis of minimal experimental datasets, even for spectroscopically challenging proteins. RASP takes as input spin systems assembled on the basis of an arbitrary set of conventional triple-resonance NMR experiments. Uniquely, RASP is capable of extensive assignments even in the abscence of...
    Downloads: 0 This Week
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  • 21
    A collection of pure Python algorithms and data structures
    Downloads: 2 This Week
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  • 22
    Downloads: 0 This Week
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  • 23

    nwbas2ecce

    nwbas2ecce converts nwchem basis set files to the ECCE format

    The basis sets included with ECCE have -- as far as I can tell -- not been updated for many years. In addition, many of the newer basis sets that come with nwchem aren't included, such as the def2- series. nwbas2ecce is a python script that aims to automate as much as possible of the conversion process of a nwchem basis set file into the files necessary for ECCE to included it in the basis set tool. The process isn't completely automatic, but I also believe that it shouldn't be to...
    Downloads: 0 This Week
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  • 24
    Natural Risk Sensing
    Platform providing the support for Wireless Sensor Networks in the domain of Natural Hazards as a Service. The objective of the WSN platform is monitoring the behaviour of rockfall barriers, rockfall netting, rock sheds and other protection systems
    Downloads: 0 This Week
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  • 25
    A High-Order Multi-Variate Approximation Scheme for Arbitrary Data Sets, C implementation of the method described in http://web.mit.edu/qiqi/www/paper/interpolation.pdf, with Python and Fortran interfaces.
    Downloads: 0 This Week
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