Search Results for "source code computer" - Page 30
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Showing 1892 open source projects for "source code computer"
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Virus QSP Modeling
C++ and Python code for simulating RNA virus replication
Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files. -
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JPOP is a pure java parallel optimization package based on the Optimization Java Package. It supports analytical gradients and Hessians for non-linear optimization. JPOP is based on uncmin in Fortran but employs java arrays and object oriented code.
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RANGE: produce random genetic transcription networks in the NEMO language, which when compiled outputs models in Systems Biology Markup Language. Generate synthetic microarray data, or use NEMO alone to SBML-ize a network, or visualize it in cytoscape.
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RPi-Monitor
Real time monitoring : RPi-Monitor always keep an eye on your computer
RPi-Monitor is a monitoring tool which keep an eye on your computer and can give you the current status and the history of resources usages in a nice looking and interactive web interface. RPi-Monitor is design to be light and powerful and doesn't relies on other software to run. It has been deigned to run on embedded device and consume very few system resources. -
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DEAPathways
Differential Expression Analysis for Pathways
This project contains the source code associated with the PLoS Computational Biology publication: "Differential Expression Analysis for Pathways". The paper text can be found here: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002967 -
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CUDAlign
CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs
...IPDPS 2011: 1199-1211 [3] Edans Sandes, Alba Melo. CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. PPOPP 2010: 137-146 The latest source code can be found in Github. See the MASA project at https://github.com/edanssandes/MASA-CUDAlign -
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YAGY
Computer calculations made easy
Yagy is a (yet another) Graphical user interface for Yacas, a (yet another) Computer Algebra System. NOTE: Yacas and yagy development has moved to github. The new repositories are located at https://github.com/grzegorzmazur/yacas and https://github.com/grzegorzmazur/yagy . The mailing list has been moved over to https://groups.google.com/forum/#!forum/yacas . The downloads section at sourceforge will be kept up to date for the foreseable future. -
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ApproxAdderLib
Library of Approximate Adders
We provide MATLAB and Verilog Models of GeAr, and previously proposed adders (ACA-I, ETAII, ACA-II and GDA) at http://sourceforge.net/projects/approxadderlib/ GeAr is a low latency Generic Accuracy Configurable Adder that provides a higher number of potential configurations compared to state-of-the-art approximate adders, thus enabling a high degree of flexibility and trade-off between performance and output quality. These MATALB and Verilog models can allow software programmer as well as hardware designers to evaluate their code and design. To the best of our knowledge, this is the first open-source library of approximate adders that facilitates reproducible comparisons and further research and development in this direction across various layers of design abstraction. This work is a result of collaborative effort between Chair for Embedded Systems (CES) at Karlsruhe Institute of Technology (KIT), Germany and Vision Image and Signal Processing (VISpro) Lab at SEECS-NUST, Pakistan. -
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GraspIt
A simulator for robotic hands.
A simulator for robotic hands. This repository still contains the (somewhat outdated) releases and user manual. For the latest source code (recommended) please go to https://github.com/graspit-simulator -
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vHDL Obfuscator GUI
vHDL Obfuscator is an small GUI to obfuscate and reformat HDL files
VHDL and Verilog HDL are standards languages for hardware description. Sometimes is necessary to share the source HDL file but maintaining a little level of control and protection of the intellectual property. This tool generate obfuscated code that is almost unreadable to humans, but is still readable to compilers and simulators. This tool use GHDL (https://sourceforge.net/projects/ghdl-updates/), HDLObf (https://sourceforge.net/projects/hdlobf/), Icarus Verilog (https://sourceforge.net/projects/iverilog/) and was created in Lazarus (http://www.lazarus-ide.org/) -
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NexusDataLink
Connect, monitor and control your (embedded) systems remotely. m2m/IoT
...The communication interface is defined in XML automatically providing a REST interface. NexusDataLink integrates smoothly in existing software or firmware and significantly reduces connection- or communication-related source code. -
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EPx
A modified version of EnergyPlus v. 7 or 8.
EPx is a "modified version of EnergyPlus v. 7 or 8", a fork of the open-source building energy simulation engine developed by the US Department of Energy. This project also contains the canonical open-source releases of the unmodified EnergyPlus source code. -
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Electro-Mechanical Computer Simulation
An electromechanical computer simulation.
This project is a simulation of an electromechanical computer based upon the design presented in Charles Petzold's book "CODE: The Hidden Language of Computer Hardware and Software" -
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Gen3D
A tool for 3D genome and chromosome structural model construction
Gen3D is an application designed to determine three-dimensional genome and chromosome models. It uses chromosomal contact data to construct three-dimensional conformations. This method can generate three-dimensional chromosomal models satisfying a large portion of chromosomal contacts. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project... -
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A HID interface component for LinuxCNC/EMC. HID is USB speak for Human Interface Device, that is, input/output USB devices such as joysticks, gamepads, CNC pendants. This component was built to support devices that weren't handled by stock LinuxCNC/EMC components.
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steam-sim
An accurate, scalable, and energy-aware simulator for WSNs
STEAM-Sim establishes a hardware/software/network co-simulation of wireless sensor networks. Original C code is used in simulation. The code is natively executed by the cpu where the simulation is run. The time annotation engine annotates the C source code used for simulation with the timing information as if the code is run on a microcontroller. The annotation process is fully automated. Hardware models are developed using the PAWiS framework and reflect the timing, functionality, and energy-consumption of real-world hardware such as a CC2420 radio transceiver. ... -
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LightCAS
LightCAS is very lightweigth Computer Algebra System
LightCAS is lightweight Computer Algebra System. Its size is less that 50K of compiled code. LightCAS can parse, display, evaluate and simplify mathematical expressions. It can also compute derivatives, find solutions of one or second order expressions, solve systems of equations, compute Taylor series. Its code is intended to be full configurable for most applications. -
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This tool is made to score machine translation performance with the TER metric. This code is based on Snover's algorithm.
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The HART (Hardware Access in Real-Time) Toolbox can be used to generate Scicos-blocks for hardware that have a C/C++ interface. The blocks can be used under Linux for soft and hard real time tasks (RTAI). Blocks are provided for DAQ (COMEDI).
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Shoal
A lot of fish in a shoal, in a gigantic scientific ocean.
Ours organization website GCModeller.org is coming online soon! Shoal Shell is the sub project for the "genome-in-code"(http://code.google.com/p/genome-in-code/) virtual cell modelling project of the bacteria Xcc 8004. Shoal Shell aim at provide the modelling tool and the debugging tool for the GCModeller virtual cell modelling, And from the extendible library package, shoal shell can manage to accomplish the entire modelling job for any other bacteria species. Shoal Shell Project... -
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Voxel CAD. Open source voxel editing and analyzing software. Edit and create multi-material voxel objects. Simulate the dynamics in a quantitative physics sandbox to test engineering designs or make moving creatures. www.voxcad.com for videos.
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A Linux tool for the MikroElektronika (www.mikroe.com) AVRprog2 programming hardware. We have migrated to Github! https://github.com/avrprog2/avrprog2-code
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Automatic cell lineage reconstruction
Automatic segmentation and tracking for 3D time-lapse microscopy
...Our approach achieves on average 97.0% linkage accuracy across all species and imaging modalities." *Please cite this paper if you use this code for your research -
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ACT-CV provides an easy to use interface between visual objects on the computer screen (or another video source) and a cognitive modeling tool.
