Showing 243 open source projects for "reference"

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  • 1
    Algorithms Math Models

    Algorithms Math Models

    MATLAB implementations of algorithms

    Algorithms_MathModels is a large MATLAB collection of algorithms and solved examples targeted at students and teams preparing for mathematical modeling competitions (national and international contests like MCM/ICM). The repository gathers implementations and case studies across many topics commonly used in contest solutions: optimization (linear, integer, goal and nonlinear programming), heuristic and metaheuristic methods (simulated annealing, genetic algorithms, immune algorithms), neural...
    Downloads: 0 This Week
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  • 2
    geocompr

    geocompr

    Geocomputation with R: an open source book

    This repository hosts the source for Geocomputation with R, an open-source book covering spatial data analysis, visualization, and modeling using R. It teaches how to work with vector and raster data, coordinate systems, mapping, and geocomputation techniques using packages like sf, terra, tmap, and more. Actively maintained and updated for real-world geospatial workflows.
    Downloads: 0 This Week
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  • 3
    XRD CUBIC

    XRD CUBIC

    Simulate crystal cell length (a), Miller indices {h, k, l}, d-spacing

    ...Enter minimum and maximum diffraction angle as 2-theta (in Degrees) 3. Enter minimum and maximum unit cell length (in Angstroms) All the possible cubic crystal parameters, as well as diffraction angle with reference to d-spacing between the given Miller indices (h k l planes), will be simulated. Designed by: Dr. M Kanagasabapathy, Asst. Professor, Department of Chemistry Rajus’ College, Madurai Kamaraj University, Rajapalayam, (TN) INDIA 626117 Home Page: https://www.enote.page/2021/12/XRD-Cubic.html
    Downloads: 0 This Week
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  • 4

    OpenSourceMetaverse Editor

    a simple virtual world editor

    ...Map: Select a marked location like "Statue of Liberty") Explore the virtual surrounding in the 360 degrees panorama. (e.g. 3D: Navigate scene in virtual environment) Access the selected item to expand (e.g. Map/3D: Click on the "Statue of Liberty" reference) Build own virtual world by personalised customisation to the settings in the text box. Share it with others. Ideal for: running virtual exhibition event; showcasing items on display like in a museum of collectible art for curation; list favourite places to visit, shop and dine; constructing, playing, sharing virtual worlds one can imagine.
    Downloads: 0 This Week
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  • 5
    RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX documents, sort of a Reference Manager or BibTeX for markup languages. It is portable and known to run on Linux, Free/NetBSD, OSX, Solaris, and Windows/Cygwin.
    Downloads: 18 This Week
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  • 6
    MTBook

    MTBook

    Machine Translation: Foundations and Models

    ...Its content is compiled into a book, which can be used for the study of senior undergraduates and graduate students in computer and artificial intelligence related majors, and can also be used as reference material for researchers related to natural language processing, especially machine translation. This book is written in tex, and all source codes are open. This book is divided into four parts, each of which consists of several chapters. The order of the chapters refers to the time context of the development of machine translation technology, while taking into account the internal logic of the machine translation knowledge system.
    Downloads: 0 This Week
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  • 7
    miRDP2

    miRDP2

    Accurately and fast analyzing microRNAs transcriptome in plants

    ...By incorporating newly updated plant miRNA annotation criteria, the accuracy of miRDP2 is also markedly improved. Our results demonstrate miRDP2 as a fast and accurate tool for analyzing the miRNA transcriptome in plants. Reference: https://doi.org/10.1093/bioinformatics/bty972
    Downloads: 23 This Week
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  • 8
    XIVO

    XIVO

    X Inertial-aided Visual Odometry

    ...It is a simplified version of Corvis [Jones et al.,Tsotsos et al.], designed for pedagogical purposes, and incorporates odometry (relative motion of the sensor platform), local mapping (pose relative to a reference frame of the oldest visible features), and global mapping (pose relative to a global frame, including loop-closure and global re-localization, this feature, present in Corvis, is not yet incorporated in XIVO). XIVO runs at 140FPS on stored data (here from a RealSense D435i sensor) or on live streams with a latency of around 1-7ms, depending on the hardware. ...
    Downloads: 1 This Week
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  • 9
    Mathematics

    Mathematics

    Accumulation of mathematical knowledge, matrix numerical optimization

    ...The repository organizes material across pure and applied mathematics, including calculus, linear algebra, probability, statistics, and optimization. It also extends into computational and algorithmic applications of mathematics, making it a useful reference for both academic study and practical problem-solving. The goal is to provide learners, researchers, and developers with a consolidated source of foundational and advanced mathematical concepts. By gathering a diverse set of topics into one repository, it supports continuous learning and interdisciplinary exploration. Its open source nature allows for community contributions and adaptation to different educational or research needs.
    Downloads: 3 This Week
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  • 10
    The new version of MinimPy (MinimPy2) is available for download at: https://osdn.net/dl/minimpy2/MinimPy2.zip Please send your feedback about this new version to mahmood.saghaei@gmail.com (include MinimPy2 in the subject) ============================================================ MinimPy is a desktop application program for sequential allocation of subjects to treatment groups in clinical trials by using the method of minimization. Comprehensive reference help is available at http://minimpy.sourceforge.net MinimPy has been fully described in the following article: Saghaei, M. and Saghaei, S. (2011) Implementation of an open-source customizable minimization program for allocation of patients to parallel groups in clinical trials. Journal of Biomedical Science and Engineering, 4, 734-739. doi: 10.4236/jbise.2011.411090. ...
    Downloads: 4 This Week
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  • 11
    TaxOnTree

    TaxOnTree

    A program for associating taxonomic information in a phylogenetic tree

    TaxOnTree is a phylogenetic program for associating Taxonomic information in a phylogenetic tree. The output is a NEX format tree file configured to be opened in FigTree, that users can promptly color by any taxa or by the ancestrality shared by sequences with query. Input can be a Fasta formatted file to be used in a BLAST search or a list of sequences represented by their identifiers (UniProtAC or NCBI gi), if a cluster is already available. Also, a newick file produced with user software...
    Downloads: 1 This Week
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  • 12

    Relative Overestimation VOP

    VOP compression for MRI with overestimation control

    ...All algorithms are implemented in Matlab and were optimized for enhanced speed. Needs Matlab R2016b at least. Prefer R2018b or newer. ***** This work is outdated and is here for reference purpose, only. ***** If you are looking for improved SAR-compression algorithms, visit: https://sourceforge.net/projects/enhanced-sar-compression/
    Downloads: 0 This Week
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  • 13

    WellMeth

    Genome-Wide DNA Methylation Analysis with RRBS

    WellMeth is a integrated framework for Reduced Representation Bisulfite-Seq analysis
    Downloads: 0 This Week
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  • 14
    CASUP

    CASUP

    Cellular Automata library for SUPercomputers (CASUP)

    ...It can be used in materials science (microstructure evolution, grain coarsening, fracture etc.), physics (Ising magnetisation) and for many other CA. If you use the library, please reference it as: A. Shterenlikht, L. Margetts, Three-dimensional cellular automata modelling of cleavage propagation across crystal boundaries in polycrystalline microstructures, Proc. Roy. Soc. A 471:20150039, DOI: http://dx.doi.org/10.1098/rspa.2015.0039. CASUP can be linked with FE (e.g. MPI FE library ParaFEM, http://parafem.org.uk) for a multi-scale multi-physics CA-FE framework. ...
    Downloads: 1 This Week
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  • 15
    Open Drug Discovery Toolkit (ODDT)

    Open Drug Discovery Toolkit (ODDT)

    Modular and comprehensive toolkit for use in cheminformatics

    Open Drug Discovery Toolkit (ODDT) is modular and comprehensive toolkit for use in cheminformatics, molecular modeling etc. ODDT is written in Python, and makes extensive use of Numpy/Scipy. You can use any supported toolkit united under common API (for reference see Pybel or Cinfony). All methods and software based on Pybel/Cinfony should be drop-in compatible with ODDT toolkits. In contrast to its predecessors, which were aimed to have minimalistic API, ODDT introduces extended methods and additional handles. These extensions allow to use of toolkits at all its grace and some features may be backported from others to introduce missing functionalities. ...
    Downloads: 9 This Week
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  • 16
    Phenalysis

    Phenalysis

    Analyze agronomic plant research plots in aerial orthomosaic images.

    A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on Wheat in a Hot and Dry Climate. ...
    Downloads: 0 This Week
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  • 17
    The Video Annotation and Reference System (VARS) is a software interface and database system that provides tools for describing, cataloging, retrieving, and viewing the visual, descriptive, and quantitative data associated with video.
    Downloads: 1 This Week
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  • 18
    OpenATPOL

    OpenATPOL

    A reference implementation of the Polish geobotanical grid

    This project is a reference, open source implementation of the coordinate conversion algorithms for the Polish geobotanical grid called ATPOL.
    Downloads: 1 This Week
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  • 19
    CorThiZon

    CorThiZon

    Cortical Thickness of brain by Zones

    ...It uses a Laplace-based technique following brain segmentation. Results can be easily reported in Excel files for further statistical analysis. If you use this toolbox, please reference: ‘Early diagnostic of Alzheimer’s disease using cortical thickness: impact of cognitive reserve', Querbes O, Aubry F, Pariente J, Lotterie JA, Démonet JF, Duret V, Puel M, Berry I, Fort JC, Celsis P, Alzheimer’s Disease Neuroimaging Initiative, Brain, 2009 Aug, 132(Pt 8):2036-47 A footnote giving the link to: http://sourceforge.net/projects/corthizon/ will be appreciated.
    Downloads: 0 This Week
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  • 20
    Climate Equity Reference Calculator
    This project implements calculations for the Climate Equity Reference Project's Calculator (CERc).
    Downloads: 0 This Week
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  • 21

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. ...
    Downloads: 0 This Week
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  • 22

    cocolib / light field suite

    CUDA library for continuous optimization and light field analysis

    ...Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE: documentation on the SourceForge page is outdated and not updated anymore, please visit http://cocolib.net ***
    Downloads: 0 This Week
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  • 23

    FactoryController

    Floor-level factory/shop automatization control software

    Floor-level factory/shop automatization control software. MODBUS realtime network & devices controller. Hi-level task-centric parallel execution scenaries. MRP/ERP integration.
    Downloads: 0 This Week
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  • 24
    OptFlux
    OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets.
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    Downloads: 9 This Week
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  • 25
    Numerics for Chemical Engineering

    Numerics for Chemical Engineering

    Numerical models for chemical and process engineering

    NCE Calculation Framework is a library of routines, models and data applicable to chemical and process engineering calculations, written in Java. -- NEW -- www.chesolver.com *ONLINE CALCULATORS*. A set of solvers to perform calculations consistently on any device, from smart-phone to desktop. The project includes the following ready to use software all based on the same core library: * Online Calculators at www.chesolver.com * Extensions for Libreoffice/Openoffice Calc...
    Downloads: 7 This Week
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