OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets.

Features

  • SBML compatible (import/export)
  • CellDesigner layouts compatible (import/export) - add simulation values
  • Metatool compatible (import/export)
  • Flat Files compatible (import/export)
  • Phenotype simulation - FBA / MOMA / ROOM / MFA
  • Flux Variability Analysis (FVA)
  • Elementary Modes Analysis (EMA / EFMs)
  • Bi-level Optimization (OptGene / OptKnock)
  • Multiobjective Optimization
  • Simulation/Optimization with Gene-Protein-Reaction (GPR) information
  • Regulatory Network Simulation / Optimization
  • Visualization of CellDesigner Layouts (Biovisualizer)

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 3.0 (GPLv3)

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OptFlux Web Site

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Additional Project Details

Operating Systems

Linux, Mac, Windows

Intended Audience

End Users/Desktop, Engineering, Science/Research

User Interface

Java Swing

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2010-06-07