OptFlux

OptFlux is an open-source and modular software aimed at being the reference computational application in the field. It is the first tool to incorporate strain optimization tasks, i.e., the identification of Metabolic Engineering targets.

Features

SBML compatible (import/export)
CellDesigner layouts compatible (import/export) - add simulation values
Metatool compatible (import/export)
Flat Files compatible (import/export)
Phenotype simulation - FBA / MOMA / ROOM / MFA
Flux Variability Analysis (FVA)
Elementary Modes Analysis (EMA / EFMs)
Bi-level Optimization (OptGene / OptKnock)
Multiobjective Optimization
Simulation/Optimization with Gene-Protein-Reaction (GPR) information
Regulatory Network Simulation / Optimization
Visualization of CellDesigner Layouts (Biovisualizer)

Project Activity

See All Activity >

License

GNU General Public License version 3.0 (GPLv3)

Follow OptFlux

OptFlux Web Site

Other Useful Business Software

Try Google Cloud Risk-Free With $300 in Credit

No hidden charges. No surprise bills. Cancel anytime.

Use your credit across every product. Compute, storage, AI, analytics. When it runs out, 20+ products stay free. You only pay when you choose to.

Start Free

Rate This Project

User Reviews

Be the first to post a review of OptFlux!

Additional Project Details

Operating Systems

Linux, Mac, Windows

Intended Audience

End Users/Desktop, Engineering, Science/Research

User Interface

Java Swing

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2010-06-07

Similar Business Software

OmnibusX

In the world of biological data science, navigating vast and complex datasets can be a daunting task. Our software toolkit is designed to empower you by accelerating analysis, promoting accessibility, and providing comprehensive visualization tools to help you make sense of these intricate...

See Software
Galaxy

Galaxy is an open source, web-based platform for data-intensive biomedical research. If you are new to Galaxy start here or consult our help resources. You can install your own Galaxy by following the tutorial and choosing from thousands of tools from the tool shed. This instance of Galaxy is...

See Software
ruffus

Ruffus is a computation pipeline library for python. It is open-sourced, powerful and user-friendly, and widely used in science and bioinformatics. Ruffus is designed to allow scientific and other analyses to be automated with the minimum of fuss and the least effort. Suitable for the simplest...

See Software
Bioconductor

The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists. Resources to maximize the potential of Bioconductor. From basic functionalities to...

See Software
Genome Analysis Toolkit (GATK)

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. The GATK...

See Software
Pluto

Since its founding in 2021 from the Wyss Institute at Harvard University, Pluto has become a trusted partner of life sciences organizations around the country ranging from biotech start-ups to public biopharma companies. Our cloud-based platform gives scientists the ability to manage all of...

See Software