Showing 290 open source projects for "reference"

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  • 1
    MCM-ICM

    MCM-ICM

    Mathematical Contest resources

    MCM-ICM is a curated archive of Outstanding Winner (“O-奖/特等奖”) solution papers from the Mathematical Contest in Modeling and the Interdisciplinary Contest in Modeling, spanning the early 2000s through recent years. The repository is organized by year, with per-year folders that collect the top-ranked reports and, in later years, additional materials such as problem statements or problem notes when available. It has evolved from a single-maintainer project into a collaborative effort, with...
    Downloads: 137 This Week
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  • 2
    GeoServer

    GeoServer

    GeoServer repository

    ...Being a community-driven project, GeoServer is developed, tested, and supported by a diverse group of individuals and organizations from around the world. GeoServer is the reference implementation of the Open Geospatial Consortium (OGC) Web Feature Service (WFS) and Web Coverage Service (WCS) standards, as well as a high-performance certified compliant Web Map Service (WMS), compliant Catalog Service for the Web (CSW) and implementing Web Processing Service (WPS). GeoServer forms a core component of the Geospatial Web.
    Downloads: 4 This Week
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  • 3
    MeshLab

    MeshLab

    The open source mesh processing system

    MeshLab is an open-source, portable, and extensible system for the processing and editing of unstructured large 3D triangular meshes. It is aimed to help the processing of the typical not-so-small unstructured models arising in 3D scanning, providing a set of tools for editing, cleaning, healing, inspecting, rendering and converting this kind of meshes. MeshLab is mostly based on the open source C++ mesh processing library VCGlib developed at the Visual Computing Lab of ISTI - CNR. VCG can...
    Downloads: 31 This Week
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  • 4
    arduino-cli

    arduino-cli

    Arduino command line tool

    Arduino CLI is an all-in-one solution that provides Boards/Library Managers, sketch builders, board detection, uploader, and many other tools needed to use any Arduino compatible board and platform from the command line or machine interfaces. In addition to being a standalone tool, Arduino CLI is the heart of all official Arduino development software (Arduino IDE, Arduino Web Editor). The script requires sh, which is always available on Linux and macOS. sh is not available by default on...
    Downloads: 18 This Week
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  • Atera all-in-one platform IT management software with AI agents Icon
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  • 5
    refbase - Web Reference Database

    refbase - Web Reference Database

    Online bibliographic manager for research groups. Zotero-compatible.

    refbase is a web-based bibliographic manager which can import and export references in various formats (including BibTeX, Endnote, MODS XML, and OpenOffice). It can make formatted lists of citations and offers powerful searching, rich metadata, and RSS.
    Downloads: 10 This Week
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  • 6
    Prokka

    Prokka

    Rapid prokaryotic genome annotation

    Prokka is a command-line software tool for rapid annotation of prokaryotic genomes (bacteria and archaea). Given a FASTA file of contigs, it predicts genes, rRNAs, tRNAs, and other functional elements, then assigns functions by comparing to reference protein databases and HMM profiles. It outputs GenBank, GFF, and other formats compatible with downstream tools and genome browsers. Prokka handles common complications—overlapping ORFs, frameshifts, alternate start codons—while providing customizable databases so researchers can bias domain or strain-specific annotations. The pipeline is optimized for speed, using multithreading and caching to annotate large microbial genomes in minutes. ...
    Downloads: 0 This Week
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  • 7
    SHG SER Processor

    SHG SER Processor

    SHGs like Sol'Ex captured SER videos processing

    Spectroheliograph like Sol'Ex captured SER videos processing with simultaneous extraction and processing of main line image, subtracting image (for Helium), main2 image (for Doppler) and reference image for geometric processing of main image. Saves resulting images (main and reference) in FITS and XCF formats. Separate delta positions from baseline fitted curve for all lines (main, main2/subtractive and reference). Correction of inclination and size ratio of images. Doppler color image creation from adjoining lines (main1/main2). ...
    Downloads: 0 This Week
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  • 8
    CoolProp
    A cross-platform, open-source, alternative to NIST REFPROP. Based on reference-accuracy equations of state and transport property correlations for refrigerants like Water, CO2, R134a, Nitrogen, Argon, Ammonia, Air, R404a, R410a, Propane and many others. A selection of secondary working fluid properties are also available. Can also make use of REFPROP when available. In addition, calculations for Humid Air Properties based on ASHRAE RP-1485 are provided.
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    Downloads: 1,391 This Week
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  • 9
    Skim

    Skim

    A PDF Reader and Note-taker for OS X

    Skim is a PDF reader and note-taker for OS X. It is designed to help you read and annotate scientific papers in PDF, but is also great for viewing any PDF file. Skim requires OS X 10.10 or higher.
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    Downloads: 5,411 This Week
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  • 10
    CERCA

    CERCA

    CERCA – Citation Extraction & Reference Checking Assistant

    ...It extracts references from PDF files and checks their existence and consistency against authoritative metadata sources, producing explainable diagnostics, audit logs, and reproducible reports. It is intended for: - Researchers performing final manuscript checks - Reviewers assessing reference consistency - Editors supporting editorial quality control - Meta-research and reproducibility workflows CERCA is an experimental tool. It does not replace manual verification. CERCA is a Java desktop application built with JavaFX. To run it, you need a JRE that includes JavaFX, such as Azul Zulu JRE. Developed by: Lidiany Cerqueira, PhD Computer Science Researcher
    Downloads: 18 This Week
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  • 11
    SAGA GIS
    ...Functions are organised as modules in framework independent Module Libraries and can be accessed via SAGA’s Graphical User Interface (GUI) or various scripting environments (shell scripts, Python, R, ...). Please provide the following reference in your work if you are using SAGA: Conrad, O., Bechtel, B., Bock, M., Dietrich, H., Fischer, E., Gerlitz, L., Wehberg, J., Wichmann, V., and Boehner, J. (2015): System for Automated Geoscientific Analyses (SAGA) v. 2.1.4. Geosci. Model Dev., 8, 1991-2007, https://doi.org/10.5194/gmd-8-1991-2015. For more information visit the project homepage and the wiki.
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    Downloads: 6,685 This Week
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  • 12
    OnScreenProtractor

    OnScreenProtractor

    Simple on-screen protractror.

    ...Originally the program was conceived to assess the angle between north and a given point on any map open on the screen, therefore the background of the application window is transparent and the angle is measured from the positive y-axis and clockwise. The application allows to move the origin of reference axes and to rotate the axes as needed. OnScreenProtractor works correctly only in Windows context. In linux 'OnScreenProtractor_v0.6.exe' can be started with 'Wine'
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    Downloads: 72 This Week
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  • 13
    G-Code Transformation Utility

    G-Code Transformation Utility

    Transformation utility to rotate coordinates in G-Code files

    ...For each reference point, travel CNC with a laser module and fine tune X/Y coordinates to target at the center of a drilled point (laser light will dim out). Write each of the measured point's coordinate with corresponding ideal (original) point coordinate into the reference point (text) file. Then use this utility with source G-Code file & measured reference file to perform transformation into a destination G-Code file.
    Downloads: 0 This Week
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  • 14
    A mostly MATLAB-compatible fuzzy logic toolkit for Octave. A complete function reference is located here: https://lmarkowsky.github.io/fuzzy-logic-toolkit/, and the official Octave documentation is here: https://www.octave.org/support If the function reference and Octave documentation do not address your questions or if you have comments, contact me at lmarkov@users.sourceforge.net.
    Downloads: 1 This Week
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  • 15
    NGSEP

    NGSEP

    NGSEP (Next Generation Sequencing Experience Platform)

    NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering, format conversion, comparison, clustering, imputation, introgression analysis and different kinds of statistics. ...
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    Downloads: 25 This Week
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  • 16

    detectproj

    Automated detection of the unknown early map projection

    ...Useful for studying and analysis of different kinds of maps with the lack of information about the map projection. The analysis is based on the minimization of residuals between control points on the early and current reference maps. Designed for cartographers as well as for enthusiasts. Available free of charge. The awareness of the map projection is primarily important for: • refinement of spatial georeference for the medium- and small-scale maps, • analysis of the knowledge about the former world, • location of the incorrectly/inaccurately drawn map regions. ...
    Downloads: 7 This Week
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  • 17

    Funi

    Python script for calculation of deflection of elastic ropes.

    ...The theory is applicable only to elastic ropes with uniform section. Any number of hanged masses or hangers may be input. The schema may be imported and exported. The graphics of deflections and tensions are shown with reference to X coordinate, while the graphic of stretches is shown with reference to the curvilinear coordinate. The solution is found by iteration, by mean of Scipy Minimize functions of Python, version 1.10. The results may be exported to .csv or .txt files. Gui is provided with tkinter windows.
    Downloads: 0 This Week
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  • 18
    CAMPARI

    CAMPARI

    Software for molecular simulations and trajectory analysis

    ...We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model. CAMPARI is a joint package for performing and analyzing molecular simulations, in particular of systems of biological relevance. It focuses on a wide availability of algorithms for (advanced) sampling and is capable of combining Monte Carlo and molecular dynamics in seamless fashion. ...
    Downloads: 7 This Week
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  • 19
    Gerber2PDF

    Gerber2PDF

    Gerber to PDF converter

    Gerber2PDF is a command-line tool to convert Gerber files to PDF for proofing and hobbyist printing purposes. It converts multiple Gerber files at once, placing the resulting layers each on it's own page within the PDF. Each layer has a PDF bookmark for easy reference. Layers can optionally be combined onto a single page and rendered with custom colours and transparency. There is a Drill to Gerber converter available from the downloads page.
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    Downloads: 25 This Week
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  • 20
    In addition to computing co-expression clusters, Maccu fishes potential co-expressed genes for a given bait set. All results can be further processed via graph-level operations so that we can compare graphs based on different reference data.
    Downloads: 0 This Week
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  • 21
    QUAST

    QUAST

    Quality Assessment Tool for Genome Assemblies

    QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. It is maintained by the Gurevich lab at HIPS (https://helmholtz-hips.de/en/hmsb). For the most up-to-date description, please visit http://quast.sf.net. Below are just some highlights. QUAST computes several well-known metrics, including contig accuracy, the number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and manual). A...
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    Downloads: 19 This Week
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  • 22

    A2L Build for MCD - AutoExtractGui

    Build A2L from ELF for Automotive MCD tool (e.g. INCA)

    ... - Optionally you may describe communication specification like XCP, CCP, CAN BPS, ... - Press "Build New A2L" button to make a new A2L for the given ELF file. As a reference, you may see how this tool works with the given sample files (sample AEC, ELF, A2L). 2. ProF Builder This tool is to help people who need to make their own ProF script to FLASH their controllers through INCA. You can utilize "template" of XCP or UDS when you need to make a new ProF script. 3. INCA Instrument SDK Sample Project As a sample, I upload an Instrument project - displaying bar graph. 4. ...
    Downloads: 13 This Week
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  • 23
    Kactus2

    Kactus2

    Kactus2 is a graphical EDA tool based on the IP-XACT standard.

    ...An example IP library is available at https://github.com/kactus2/ipxactexamplelib Video tutorials are available at https://www.youtube.com/user/Kactus2Tutorial Issue tracker is available at https://github.com/kactus2/kactus2dev/issues For publications, kindly use this reference: http://joss.theoj.org/papers/73e33d6850d24f0d6aad0d5f38937f83 Contributors: Antti Kamppi, Joni-Matti Määttä, Lauri Matilainen, Timo D. Hämäläinen, Mikko Teuho, Juho Järvinen, Esko Pekkarinen, Janne Virtanen, Anton Hagqvist, Vasilii Feshchenko
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    Downloads: 17 This Week
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  • 24
    eavref

    eavref

    A tool for low-power CMOS voltage reference designs

    EAVREF is a computer-aided tool for robustly designing ultra-low-power CMOS voltage references. The tool is compatible with the powerful Ngspice simulator, enabling open-source microelectronics design flow with SkyWater 130nm Technology.
    Downloads: 0 This Week
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  • 25
    Euler Pole Calculator (EPC)

    Euler Pole Calculator (EPC)

    A Matlab software to estimate Euler pole parameters

    ...EPC: Matlab Software to Estimate Euler Pole Parameters". GPS Solutions 18 (1): 153–62. DOI: 10.1007/s10291-013-0354-4*. - Goudarzi, M A. 2025."Evaluating Euler Pole Parameters for the North American Terrestrial Reference Frame of 2022". Geodesy and Geodynamics. DOI: 10.1016/j.geog.2025.03.004. * The element G_23 of the Jacobian matrix of linearized observations in formula 18 (page 4) in this paper has an incorrect sign (minus sign should be removed). This is discussed in: https://doi.org/10.1007/s10291-025-01932-7.
    Downloads: 2 This Week
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