Search Results for "reference"
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Showing 169 open source projects for "reference"
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Find Hidden Risks in Windows Task SchedulerWindows Task Scheduler might be hiding critical failures. Download the free JAMS diagnostic tool to uncover problems before they impact production—get a color-coded risk report with clear remediation steps in minutes.
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MCM-ICM
Mathematical Contest resources
MCM-ICM is a curated archive of Outstanding Winner (“O-奖/特等奖”) solution papers from the Mathematical Contest in Modeling and the Interdisciplinary Contest in Modeling, spanning the early 2000s through recent years. The repository is organized by year, with per-year folders that collect the top-ranked reports and, in later years, additional materials such as problem statements or problem notes when available. It has evolved from a single-maintainer project into a collaborative effort, with... -
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GeoServer
GeoServer repository
...Being a community-driven project, GeoServer is developed, tested, and supported by a diverse group of individuals and organizations from around the world. GeoServer is the reference implementation of the Open Geospatial Consortium (OGC) Web Feature Service (WFS) and Web Coverage Service (WCS) standards, as well as a high-performance certified compliant Web Map Service (WMS), compliant Catalog Service for the Web (CSW) and implementing Web Processing Service (WPS). GeoServer forms a core component of the Geospatial Web. -
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MeshLab
The open source mesh processing system
MeshLab is an open-source, portable, and extensible system for the processing and editing of unstructured large 3D triangular meshes. It is aimed to help the processing of the typical not-so-small unstructured models arising in 3D scanning, providing a set of tools for editing, cleaning, healing, inspecting, rendering and converting this kind of meshes. MeshLab is mostly based on the open source C++ mesh processing library VCGlib developed at the Visual Computing Lab of ISTI - CNR. VCG can... -
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arduino-cli
Arduino command line tool
Arduino CLI is an all-in-one solution that provides Boards/Library Managers, sketch builders, board detection, uploader, and many other tools needed to use any Arduino compatible board and platform from the command line or machine interfaces. In addition to being a standalone tool, Arduino CLI is the heart of all official Arduino development software (Arduino IDE, Arduino Web Editor). The script requires sh, which is always available on Linux and macOS. sh is not available by default on... -
Atera all-in-one platform IT management software with AI agentsAtera’s AI agents don’t just assist, they act. From detection to resolution, they handle incidents and requests instantly, taking your IT management from automated to autonomous.
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refbase - Web Reference Database
Online bibliographic manager for research groups. Zotero-compatible.
refbase is a web-based bibliographic manager which can import and export references in various formats (including BibTeX, Endnote, MODS XML, and OpenOffice). It can make formatted lists of citations and offers powerful searching, rich metadata, and RSS. -
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Prokka
Rapid prokaryotic genome annotation
Prokka is a command-line software tool for rapid annotation of prokaryotic genomes (bacteria and archaea). Given a FASTA file of contigs, it predicts genes, rRNAs, tRNAs, and other functional elements, then assigns functions by comparing to reference protein databases and HMM profiles. It outputs GenBank, GFF, and other formats compatible with downstream tools and genome browsers. Prokka handles common complications—overlapping ORFs, frameshifts, alternate start codons—while providing customizable databases so researchers can bias domain or strain-specific annotations. The pipeline is optimized for speed, using multithreading and caching to annotate large microbial genomes in minutes. ... -
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A cross-platform, open-source, alternative to NIST REFPROP. Based on reference-accuracy equations of state and transport property correlations for refrigerants like Water, CO2, R134a, Nitrogen, Argon, Ammonia, Air, R404a, R410a, Propane and many others. A selection of secondary working fluid properties are also available. Can also make use of REFPROP when available. In addition, calculations for Humid Air Properties based on ASHRAE RP-1485 are provided.
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Skim
A PDF Reader and Note-taker for OS X
Skim is a PDF reader and note-taker for OS X. It is designed to help you read and annotate scientific papers in PDF, but is also great for viewing any PDF file. Skim requires OS X 10.10 or higher. -
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CERCA
CERCA – Citation Extraction & Reference Checking Assistant
...It extracts references from PDF files and checks their existence and consistency against authoritative metadata sources, producing explainable diagnostics, audit logs, and reproducible reports. It is intended for: - Researchers performing final manuscript checks - Reviewers assessing reference consistency - Editors supporting editorial quality control - Meta-research and reproducibility workflows CERCA is an experimental tool. It does not replace manual verification. CERCA is a Java desktop application built with JavaFX. To run it, you need a JRE that includes JavaFX, such as Azul Zulu JRE. Developed by: Lidiany Cerqueira, PhD Computer Science Researcher -
Most modern and flexible cloud platform for MLM companiesFor direct selling (MLM) companies, from startup to well established enterprises with millions of distributors across the world
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...Functions are organised as modules in framework independent Module Libraries and can be accessed via SAGA’s Graphical User Interface (GUI) or various scripting environments (shell scripts, Python, R, ...). Please provide the following reference in your work if you are using SAGA: Conrad, O., Bechtel, B., Bock, M., Dietrich, H., Fischer, E., Gerlitz, L., Wehberg, J., Wichmann, V., and Boehner, J. (2015): System for Automated Geoscientific Analyses (SAGA) v. 2.1.4. Geosci. Model Dev., 8, 1991-2007, https://doi.org/10.5194/gmd-8-1991-2015. For more information visit the project homepage and the wiki.
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A mostly MATLAB-compatible fuzzy logic toolkit for Octave. A complete function reference is located here: https://lmarkowsky.github.io/fuzzy-logic-toolkit/, and the official Octave documentation is here: https://www.octave.org/support If the function reference and Octave documentation do not address your questions or if you have comments, contact me at lmarkov@users.sourceforge.net.
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NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering, format conversion, comparison, clustering, imputation, introgression analysis and different kinds of statistics. ... -
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detectproj
Automated detection of the unknown early map projection
...Useful for studying and analysis of different kinds of maps with the lack of information about the map projection. The analysis is based on the minimization of residuals between control points on the early and current reference maps. Designed for cartographers as well as for enthusiasts. Available free of charge. The awareness of the map projection is primarily important for: • refinement of spatial georeference for the medium- and small-scale maps, • analysis of the knowledge about the former world, • location of the incorrectly/inaccurately drawn map regions. ... -
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Funi
Python script for calculation of deflection of elastic ropes.
...The theory is applicable only to elastic ropes with uniform section. Any number of hanged masses or hangers may be input. The schema may be imported and exported. The graphics of deflections and tensions are shown with reference to X coordinate, while the graphic of stretches is shown with reference to the curvilinear coordinate. The solution is found by iteration, by mean of Scipy Minimize functions of Python, version 1.10. The results may be exported to .csv or .txt files. Gui is provided with tkinter windows. -
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CAMPARI
Software for molecular simulations and trajectory analysis
...We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model. CAMPARI is a joint package for performing and analyzing molecular simulations, in particular of systems of biological relevance. It focuses on a wide availability of algorithms for (advanced) sampling and is capable of combining Monte Carlo and molecular dynamics in seamless fashion. ... -
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In addition to computing co-expression clusters, Maccu fishes potential co-expressed genes for a given bait set. All results can be further processed via graph-level operations so that we can compare graphs based on different reference data.
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QUAST
Quality Assessment Tool for Genome Assemblies
QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. It is maintained by the Gurevich lab at HIPS (https://helmholtz-hips.de/en/hmsb). For the most up-to-date description, please visit http://quast.sf.net. Below are just some highlights. QUAST computes several well-known metrics, including contig accuracy, the number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and manual). A... -
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Euler Pole Calculator (EPC)
A Matlab software to estimate Euler pole parameters
...EPC: Matlab Software to Estimate Euler Pole Parameters". GPS Solutions 18 (1): 153–62. DOI: 10.1007/s10291-013-0354-4*. - Goudarzi, M A. 2025."Evaluating Euler Pole Parameters for the North American Terrestrial Reference Frame of 2022". Geodesy and Geodynamics. DOI: 10.1016/j.geog.2025.03.004. * The element G_23 of the Jacobian matrix of linearized observations in formula 18 (page 4) in this paper has an incorrect sign (minus sign should be removed). This is discussed in: https://doi.org/10.1007/s10291-025-01932-7. -
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33
A project on topography and weather comparison
...Well, the founder had a project given up project of self-sustainability at house number 33. As the bounds of the topic of this project now is not quite clear or well defined, it is sort of a sentimental reference to the older project. And why a Spanish Unixname? Always English is boring. -
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kSNP
kSNP4 does SNP discovery and SNP annotation from whole genomes
kSNP4 identifies the pan-genome SNPs in a set of genome sequences, and estimates phylogenetic trees based upon those SNPs. SNP discovery is based on k-mer analysis, and requires no multiple sequence alignment or the selection of a reference genome, so kSNP4 can take 100's of microbial genomes as input. A SNP locus is defined by an oligo of length k surrounding a central SNP allele. kSNP4 can analyze both complete (finished) genomes and unfinished genomes in assembled contigs or raw, unassembled reads. Finished and unfinished genomes can be analyzed together, and kSNP can automatically download Genbank files of the finished genomes and incorporate the information in those files into the SNP annotation. ... -
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...P Boisse, Woodhead Publishing Ltd, 2021, ISBN: 978-0-12-819005-0. https://doi.org/10.1016/B978-0-12-819005-0.00008-3 Lin, H., Brown, L. P. & Long, A. C. 2011. Modelling and Simulating Textile Structures using TexGen. Advanced Materials Research, 331, 44-47. To reference version 3.13.0 please use: Louise Brown, mike-matveev, & georgespackman. (2023). louisepb/TexGen: TexGen v3.13.1 (v3.13.1). Zenodo. https://doi.org/10.5281/zenodo.8221491
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geocompr
Geocomputation with R: an open source book
This repository hosts the source for Geocomputation with R, an open-source book covering spatial data analysis, visualization, and modeling using R. It teaches how to work with vector and raster data, coordinate systems, mapping, and geocomputation techniques using packages like sf, terra, tmap, and more. Actively maintained and updated for real-world geospatial workflows. -
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XRD CUBIC
Simulate crystal cell length (a), Miller indices {h, k, l}, d-spacing
...Enter minimum and maximum diffraction angle as 2-theta (in Degrees) 3. Enter minimum and maximum unit cell length (in Angstroms) All the possible cubic crystal parameters, as well as diffraction angle with reference to d-spacing between the given Miller indices (h k l planes), will be simulated. Designed by: Dr. M Kanagasabapathy, Asst. Professor, Department of Chemistry Rajus’ College, Madurai Kamaraj University, Rajapalayam, (TN) INDIA 626117 Home Page: https://www.enote.page/2021/12/XRD-Cubic.html -
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OpenSourceMetaverse Editor
a simple virtual world editor
...Map: Select a marked location like "Statue of Liberty") Explore the virtual surrounding in the 360 degrees panorama. (e.g. 3D: Navigate scene in virtual environment) Access the selected item to expand (e.g. Map/3D: Click on the "Statue of Liberty" reference) Build own virtual world by personalised customisation to the settings in the text box. Share it with others. Ideal for: running virtual exhibition event; showcasing items on display like in a museum of collectible art for curation; list favourite places to visit, shop and dine; constructing, playing, sharing virtual worlds one can imagine. -
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MTBook
Machine Translation: Foundations and Models
...Its content is compiled into a book, which can be used for the study of senior undergraduates and graduate students in computer and artificial intelligence related majors, and can also be used as reference material for researchers related to natural language processing, especially machine translation. This book is written in tex, and all source codes are open. This book is divided into four parts, each of which consists of several chapters. The order of the chapters refers to the time context of the development of machine translation technology, while taking into account the internal logic of the machine translation knowledge system.
