Open Source Java Scientific/Engineering Software - Page 93

A Java library for evolutionary biology and bioinformatics, including objects representing biomolecular sequences, multiple sequence alignments and phylogenetic trees.

As of 2012-12-18, this project may now be found at http://http://code.google.com/p/paba JECO is a Evolutionary Computation Library deveoloped in Java. It includes a variety of evolutionary optimization techniques such as genetic algorithm, genetic programming, evolutionary mapping methods, particle swarm optimization, ant colonies, etc.

JECL, pronounced "Jekyll", is an open-source Java library implementing a variety of evolutionary algorithms. The goal is to provide a uniform interface for describing problems, running evolutionary algorithms, and accumulating results. The Java Evolutionary Computation Library is no longer under active development. We suggest the MOEA Framework (http://www.moeaframework.org/), jMetal (http://jmetal.sourceforge.net/), ECJ (http://cs.gmu.edu/~eclab/projects/ecj/) or JGAP (http://jgap.sourceforge.net/) as alternatives.

Java Evolutionary MultiAgent System allows user to solve multiobjective optimization problems using evolutionary algorithms with energetical elitism in multiagent system. It allows also to perform test using varied metrics.

JFEP is a Java fast mathematical expression parser and evaluator. It is designed to avoid inefficiency and to support multiple evaluations without overhead.

JFD is an educational Java tool for computing the formal derivative of an expression. It recognizes the regular operators, parentheses and functions. It can also be extended with custom functions and/or operators.

Java Fuzzy Editor is a basic editor to allow creation of fuzzy based rules. It will save to serveral formats including to source code in several languages.

Utilities for CNC (G-Code) using Java

A Java API for manipulation of GDSII stream data. It is intended to provide a useful, reusable and platform independant library for CAD/CAE application developers. This API Requires the Java Backus-Naur Test API (JBNT). You may download it from: ht

A tool to read and browse records from a GDSII stream file.

A GDSII database parser and stream integrity verifier

Java implementation and wrappers for the GNU Scientific Library. A library of numerical recipes for scientific programmers.

JGRIB a Java program to read GRIB (GRid in Binary) files. GRIB is a gridded data standard from WMO (World Meteorological Organisation) and is used by many meteorological organisation.

JGAL is a Java Genetic Algorithms Library.

JGPShell is a java api to manage content of smart cards in conformance with the Global Platform standard. Features : script language (including if and loop..), can execute commands on many cards at the same time, can get the card list from a MySQL db.

Java ILP is a simple java interface to (mixed) integer linear programming solvers such as lp_solve, Glpk, Gurobi, SAT4J (0-1 ILP), MiniSat+(0-1 ILP), CPLEX, or Mosek. (documentation at http://javailp.sourceforge.net/)

Java and ColdFusion libraries to lookup country code and language from IP address. It uses a local copy of the WHOIS database to perform fast, accurate lookups of country codes. Useful for log analysis, internationalization, geolocation, etc..

jIR is an open source project focused on building an open platform for image processing tasks. It is composed of individual algorithms whose task is to extract or compare information in a data set of images.

JisM is a multi-threads program allowing users to perform segmentation's tasks on a picture. Users could add new segmentation methods as JisM's plugins. Plugins can be written in Java or in Python.

This is a Java Just Intonation Calculator. It allows users on many platforms to calculate and hear just tunings. It will support saving and opening tunigs and opening spreadsheet documents and allow users to send tunings to their synthesizers, via MIDI

JKINSHIP: Java open source port of Macintosh Classic Kinship program

Java Kohonen Neural Network Library Kohonen neural network library is a set of classes and functions for design, train and use Kohonen network (self organizing map).

A Java Lego Mindstrorms RCX emulator. Includes a grapical interface with a memory map and register and variables monitors.

jlpv is a Java Light PACS Viewer application useful for review series or images from DICOM data retrieved from the DCM4CHEE PACS system. It also uses ImageJ as a rendering engine or viewer. This project is in a early stage.

Computes and displays Lindenmayer Systems. The programming language is Java.