Open Source Java Scientific/Engineering Software - Page 97

DTreeJungle provides educational applets to teach the concepts of decision trees for regular pattern recognition.

Use statistical methods to analyze time-course data (gene expression microarray and RNA-seq data in particular, but not limited to). Apply significance tests to filter out only significant genes or time series. Cluster time series into similar groups. Generate network models, including linear or non-linear models. Variable selection and optimization routines included. Written in Scala and R. The application is a cross-platform desktop app with a simple GUI and is fully functional currently. The app was and is developed at the University of Rochester (http://cbim.urmc.rochester.edu) under the GPL 3.0 license. This is a fork of that project.

Book Shepherd helps to manage ebooks, articles, links and other electronic documents.

DSM Simulator is a set of tools written in Java to help electrical engineers and energy consummers to simulate the savings that the use of a Energy management Control System may bring to them according to their electrical equipment, the consumption profil

Dendrarium służy do wybierania i weryfikacji składnikowych drzew składniowych generowanych przez parser Świgra. System jest użytkowany w Instytucie Podstaw Informatyki PAN do tworzenia banku drzew składniowych dla języka polskiego Składnica.

Depth Explorer is a visual interactive tool for learning about Statistical Data Depth and evaluating depth measures.

A framework for highly customisable e-commerce: A system for automatically build an e-commerce interface supporting product´s contraints and properties.

This project tries to find geographical locations (formulated by GPS positions) for specific queries (eg 'art') in specific environments (eg 'Maastricht') by analyzing webpages.

The Disease Simulation Framework (DiSiF) represents a spatial simulation environment for infectious viral disease spread. The framework currently embodies a very simple framework for simulation in 2D space with focus on SARS and the Common Flu.

This projects concentrates software for setting up a chemical dictionary website.

DigiJSim is a simulator for Logial Circuits. It is able to create and simulate logical circuits easily. So it is very helpfull for educational purposes.

Working with a paper-based BOM is painful. This effort will build upon the Java Swing Tree structure.

Digital Image toolkit

Digital Psionics develops a variety of scientific and entertainment software.

The DRS (Digital Replay System) is a desktop application for replaying and analysing combinations of video, audio, images, transcripts and computer log files in an integrated way.

A Java implementation of the Dijkstra bestpath algorithm.

DimReduction project provide an open-source multiplatform (Java) graphical environment for bioinformatics problems that supports many feature selection algorithms, pattern recognition techniques, criterion functions and graphic visualization tools.

Dimenso is a library of numeric types for .Net and Java, that obey dimensional analysis and permit calculations with physical quantities. Due to the lack of C++ - like templates with numeric arguments, code generation is employed using Python.

This program can be used to count or remove adapter dimers in fastq files. Using a provided adapter sequence, it generates variations of this sequence and stores them in a hash table. The reads can then be directly matched against the hash. It is far more time efficient than doing alignment.

This project contains a set of files (Perl, Java, and an R package) used to perform analysis of oligonucleotide signatures in metagenomes and genomes.

DiscriAlign implements a novel algorithm that aligns a set of biological interaction networks.It identifies both functionally conserved and dissimilar regions.

This JAI based application estimates the disparity between two images. It works by first detecting remarkable points in both images and then finding the best possible match between the two sets of points.

A program to solve dispersion equation in water waves mechanics using iterated and graphical methods.

http://www.isima.fr/~reuillon/index.php?option=com_content&task=category&sectionid=4&id=13&Itemid=26 DistMe is a toolkit and a script environment to distribute stochastic simulations on distributed execution environements (clusters, calculation grids).

This project constitutes an implementation of a custom-design distributed computing environment. The implementation is based on a form of Nbody simulation, which ran successfully across 33 networked-hosts.