Open Source Java Scientific/Engineering Software - Page 94

A ContextTree is a way of dynamically forming relationships between information: the same information can be viewed in different ways, depending on what you want from it.

The goal of this project is to combine different sources of information as well as methods to help in the process of gap closing / genome finishing in high throughput sequencing.

ConvertMAS - molecule converter; use to convert Chemical File Formats. It works on mol, mol2 and sdf files. It converts single file to respective formats. It will split sdf file with multiple molecules into seperate single files of any desired format. Also ConvertMAS creates sdf files from joining of mol, mol2 and sdf files. This is stand alone application; hence no need of internet connectivity to get results. It will generate output files in less time. Various online tools are available for conversion of Chemical file formats; but ConvertMAS mainly works on mol, mol2 and sdf effectively.

Conzilla is a concept browser. It browses and edits 'context-maps', a construct similar to conceptual models, UML diagrams or mind-maps. Conzilla uses RDF to describe and distribute such models.

Coq4Eclipse is a plugin for the Eclipse Platform that provides an interface to the Coq Proof Assistant. It will support the user with syntax highlighting, search facilities, mathematical symbols, pretty-print, etc.

Providing an extremely-easy-to-use GUI for editing Openbravo ERP's language xml files, aiming for a colaborative work where a localized community (usually from the same country) works over the same files to generate a new complete translation quickly.

The Cornell Tree-Ring Analysis System. A program for several aspects of dendrochronology: measuring, indexing, crossdating, graphing, summing masters, and even drawing maps of locations of sites.

Yet another MAZE! There is going to be maze generation algorithm(s) and pathfinders who use certain algorithms to solve the maze. This project was initially a student team project at Thompson Rivers University(TRU) to demonstrate search algorithms.

CORPSE (CORPus SEarch) is a powerful search engine written in Java. The aim is to provide an efficient implementation of a word level inverted index search with various cool functions that can be used on very large corpora.

A simple java program using PDFBox and Prefuse libraries to extract text from pdf and display as a graph. Can also link words based on their contexts.

Enrich and query corpora in the TEI-XML vocabulary. CorpusReader manage very large corpora and corpora containing milestone annotation. It provides tools for enriching corpora with output of linguistic parsers, and for extracting quantitative information

Corra [BMC Bioinformatics 2008] is a computational framework & tools for discovery proteomics using label free LC-MS and ATAQS [BMC Bioinformatics 2011] is a computational framework & tools for validation proteomics using SRM LC-MS method.

CosmicOS is a framework for creating stand-alone messages suitable for sending to ourselves in the distant future, or to use in SETI research. It is inspired by Hans Freudenthal's language, Lincos, and Carl Sagan's book, Contact.

A complete set of code to build your own robot for cospace dance using: raspberry pi, arduino, xbee and blender,

Cougar Squared is a new Java library for machine learning and data mining research, supporting research needs of the community. It is written by researchers for researchers. It extends the WEKA and YALE machine learning frameworks.

Crawl-By-Example runs a crawl, which classifies the processed pages by subjects and finds the best pages according to examples provided by the operator. Crawl-By-Example is a plugin to the Heritrix crawler, and was done as a part of GSoC06 program.

Plugin for JOSM (OpenStreetMap editor) that makes a grid of streets from only two. It traces parallels to the existing ones and make all intersections. We need it because our Country have a lot of cities with a regular design and lot of square blocks.

The application Crimeblips provides up-to-date crime statistics for Berlin (Germany). It maps and visualizes crimes, allowing users to identify crime hot spots, trends and general patterns. Bayesian algorithms are used to extract relevant information.

Open channels hydraulics is very important part of hydraulic and civil engineering. Finding critical depth in open channel flows is a basic task in this field. This is an application for calculating critical depth in open channels flow.

Crow - Computational Representation Of Whatever. A platform for the integration and mining of complex and distributed data. Represents cross-linked semantic web documents as a network of software objects and offers easy ways to filter, and sort them.

An online database and cross-platform, game-like client where gardeners/farmers (small or large scale) can log their actions and measurements (such as weather, yield, current plant size). Any user can then play it back visually, or play with the data and see a simulation inferred from the knowledge database, or calculate an optimal design within given constraints, inferred from the knowledge available at that time. This is both a tool for playing, in order to entertain and inspire people, as well as a serious feedback and design tool. There will be a user feedback system to value the accuracy of the data. It is allowed to enter and share mock farming data, as long as it's tagged as being fantasy, to exclude it from the analyses. Things like dietary information, tiredness and bio-constructions will be included as well, to improve optimizations of a garden design with (partial) self-sufficiency in mind. The UI will resemble a garden, and can switch to simplified views.

Crypt-EG is an easy visual cryptosystem program that implements ElGamal method using elliptic curves.

A simple calculator to help with the math operations required by cryptographic algorithms like RSA and El Gamal.

The applets offered by this project demonstrate some principles and algorithms of cryptography.