Open Source Java Scientific/Engineering Software - Page 89

The code here is a parser for CALBC corpus into Java object.

CB-Commander is a plugin based tool that tries to integrate high throughput sequencing algorithms. It allows researchers to design and execute their experiments through a user friendly interface.

A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.

The Octet-CDK interoperability package.

Project MOVED to Codehaus New location is http://esper.codehaus.org The Esper project aims to provide a general-purpose event processing facility in Java for complex event processing of real-time, high throughput data streams.

Cell Electrophysiology Simulation Environment (CESE)

Centralized External Input (CEXI) Toolkit allows large display input devices (e.g., Smart Board) to be accessed in high level languages (e.g., Java, Microsoft .NET). CEXI Toolkit removes the requirement to use low level input SDKs so programmers can dir

This is the software repository of CEqEA, the ab-intra reasoning and modelling environment

A CFML to JSP translator

This program allows you to create a transmission hologram using just a computer, a laser-printer, and an overhead transparency. This hologram will behave like one created using a laser and can be projected or viewed with a point source.

The CHIP Cluster Generator attempts to create spatio-temporal cluster data in an automated fashion to help evaluate epidemic detection software. The spatio-temporal data will then be used to determine robustness of spatial detection algorithms.

Charmy is a tool for specification of Software Architectures through diagrammatic, UML-based notations, and validation of the architectural specification conformance with respect to functional requirements.

CI-Reports is helpful to generate a report of clinical trial data based CDISC SDTM. CI-Reports also provide the reports as PDF, Excel, Word, Flash, LibreOffice and RTF.

Source code for the Chemical Informatics and Cyberinfrastructure Collaboratory project.

CIP-FOSS will serve as a common entry page for Free and Open Source Software developed at the International Potato Center (CIP), Lima, Peru (http://www.cipotato.org).

CLEiM (Cross Lingual Education in Medicine) is an opensource version of an Intelligent System which extract concepts from medical texts and provides qualified information. It integrates information from various sources. This system has been developed by the Intelligent System Group GSI (http://www.esi.uem.es/gsi/) at UEM University. We do NER (Named Entity Recognition) based on GATE platform. The installation is simple, you can use it as a Web application. It has been tested under apache-tomcat. The original system has been successfully used to carry out active learning activities with medical students. However, it could be interesting in much more knowledge fields.

The CMSD Tools project provides tools in different programming languages to help manipulating data in the Core Manufacturing Simulation Data format.

CONECT is a software to design, setup, commission and test home and building-automation systems. It will support various bus systems such as EIB.

COPanno is now at http://download.tuxfamily.org/copanno/ COPanno is a small utility to find the best solution for cutting rectangular panels in a defined-size sheet. * v1.2 Introduce multi-threading (calculation is up to 8 times faster) and internationalization support. English and French translations are done. * v1.3 Add per panel orientation keeping Copanno est un utilitaire de calepinage donnant la meilleure manière de découper des panneaux rectangulaire dans une feuille de dimension définie. * v1.2 Le calcul parallèle permet d'accélérer le traitement sur les ordinateurs multi-cœurs. La traduction en Français et en Anglais est réalisée. * v1.3 La conservation de l'orientation des panneaux (le fil) peut être définie pour chaque élément.

Customizable Observation Video imagE Record. COVER software has been designed and developed by Ifremer / LEP in complement of existing software for underwater vehicle videos/photos analysis.

As an Eclipse Plugin the COWOZ-CLient supports electronic paper prototyping of a distributed team of UI-Designers in sketching User Interfaces in the early stage of UI-Design together with iterative and distributed usability testing.

CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft

CRANKS is an Java application that uses the Swing toolkit to provide an interactive environment for the animation and kinematic synthesis of four-bar mechanisms created through a series of geometrical constructions.

CRFChunker: Conditional Random Fields Phrase Chunker (Phrase Chunking Tool) for English. The model was trained on sections 01..24 of WSJ corpus and using section 00 as the development test set (F1-score of 95.77). Chunking speed: 700 sentences/s

CSV Comparator is a tool for comparing files which contain CSV-Data. It was created for performance engineers to be able to have a easy way to compare data from two testruns and be able to automate the comparing process of various files with scripts. There is a command line tool as well as a user interface. In case you need to compare .xml-Files you can convert them to .csv-Files with my other project CSV Transformer. The advantages by using CSV as input and output are the following: - Many applications allow an export of its data to CSV or Excel(were it could be saved to CSV) - It is possible to pre- and postprocess the data, e.g removing version numbers before comparing - It is easy to create CSV data from logfiles and other resources by using unix tools like sed or awk - CSV can be loaded into other applications, especially Excel, were it can be formatted by macros for analyzing.