Open Source Java Scientific/Engineering Software - Page 88

The JPAT API is a Java API designed to provide developers with tools for calculating the results of protease digestion of proteins and ms/ms fragmentation of peptides. JPAT also contains GUI components for displaying the results. JPAT is a nice way to get

JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/

Java library that interfaces with "The USB INSTEON PowerLinc Controller" built by Smartlabs Design. This library is built on top of the javax.usb linux reference implementation, but should work under Windows as well.

JPOP is a pure java parallel optimization package based on the Optimization Java Package. It supports analytical gradients and Hessians for non-linear optimization. JPOP is based on uncmin in Fortran but employs java arrays and object oriented code.

JPPL is an experimental, exploratory project aiming at the target of geting better (written) language analyzing software.

From a pdb file, the java program calculates the van der Walls surface of the protein in the file.

Very basic UDP traffic generator. Works with a packet receiver to control the network status as Bandwidth, RTT, jitter, Loss % etc etc... Set Source Address, Destination address - Port Packet Size Stream Bandwidth And press start Command Line interface available java -jar JPacketGenerator.jar srcAddress srcPort dstAddress dstPort bitRate_bps All parameters are mandatory and with parameters the generator require no GUI or windows manager to work. If The project will be useful I'll post some more detail or helps about the usage.

JPhylo is a Java based visualization program used to display sequences of phylogenetic trees.

JPhysChem - a mathematical modeling toolbox designed to provide an abstract layer and a comprehensive graphical front-end for general model building and specific modeling and data processing in the field of mass spectrometry and physical chemistry.

PhysX adapter for java. Translates full functionality. Utilizes type safety, polymorphism, inheritance, and other java stuff.

JPhysics is library for simulation physics written in Java.

JPick is a java tool for picking first arrival times in multichannel seismic data. Data are read from industry-standard SEG-2 seismograph files. Intended for seismic refraction surveys.

JPlasma is a Java port of PLASMA (Parallel Linear Algebra for Scalable Multi-core Architectures)

JPlot is a multi-purpose data plotting program for use as the graphic front-end of (scientific) software. JPlot is also available as a stand-alone application with a complete and easy-to-use graphic user interface (GUI).

JPlotter is an open source math plotter that can draw graphs of arbitrary mathematical functions. Some of the special features are plotting of the derivatives, area calculation, plotting of directional fields of differential equations and plotting of phase and amplitude graph of complex functions.

This application is a clock for poker tournaments. Absolutely everything will be configurable: levels with small/big blinds/ante, duration, breaks, number of players, tables, payout table.

JPowerFlow - a steady state electric power system power flow solver.

Java port of primer3

Software tools for visual psychophysics research. The focus of these tools is amblyopia research, but they can be used in some related visual neuroscience research tasks.

The project purpose is to develop an application to store and analyze workout data. Workout data in terms of duration of a training session, average pulse during the session and so forth. The focus will be on endurance training.

JQHull is a Brad Barber's QHull library (http://www.qhull.org) wrapped in Java.

JQuadRobot, developed in Java and Java3d API, is designed to control a custom Quadruped Robot. The project contains two software components: editor for movement control and a simulator.

JQuantity is a set of Java classes which enable developers to build scientific applications using quantities which are either exact or have known (bounded) errors. Quantities may include units, may be complex, non-scalar, etc. Extends java.math classes

In the regulatory assessment of chemicals (e.g. under REACH), Quantitative Structure Activity Models (QSAR) are playing an increasingly important role in predicting properties for hazard and risk assessment. This implies both a need to be able to identify relevant QSARs and to use them to derive estimates and/or have access to their precalculated estimates. To help meet these needs, the JRC QSAR Model Database is established and freely accessible through http://qsardb.jrc.ec.europa.eu/qmrf The QSAR Model Reporting Format (QMRF) is a harmonised template for summarising and reporting key information on QSAR models, including the results of any validation studies. The information is structured according to the OECD validation principles. Download the QMRF Editor in order to describe your models in QMRF format and send the descriptions to JRC-COMPUTOX@ec.europa.eu to have them included in the database. More at http://qmrf.sourceforge.net/

JRandO is a test data generator or better test object generator framework. It can be used in JUnit tests or in performance test (for e.g. using JMeter). It may also be useful in anonymization of data or in a simulation environment.